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MW073017.1__QPB08608.1__X__00129

Bact-Vir

MW073017.1__QPB08608.1__X__00129

Identity

Accession:
MW073017 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_Va2

TaxID: 2783668

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-69
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfvC00 6.10.250.2010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 54.0 5.50e-01 86.9% 76.7%
2nyfA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.72 66.0 4.08e-01 100.0% 53.0%
3unvA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.66 58.0 3.60e-01 96.7% 18.1%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.65 55.0 5.05e-01 91.8% 89.7%
3laaA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.60 47.0 3.50e-01 88.5% 51.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580103 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.74 54.0 4.93e-01 77.0% 61.3%
5004320 2006.1.4.24 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_12 0.73 50.0 3.28e-01 85.2% 18.7%
3274068 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.62 43.0 4.58e-01 72.1% 87.3%
3641442 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.61 47.0 3.90e-01 82.0% 49.5%
5027504 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.57 35.0 3.07e-01 77.0% 42.2%