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MW082584.1__QPI13881.1__MYO4S_00125__00125
Bact-VirMW082584.1__QPI13881.1__MYO4S_00125__00125
Identity
- Accession:
- MW082584 ↗
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Taxonomy
TaxID: 2787015
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
rep: NC_070780.1__YP_010651107.1__PP428_gp270__00270__D2-75
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pp6A02 | 2.40.10.210 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) | 0.65 | 47.0 | 4.83e-01 | 100.0% | 79.4% |
| 5cfjA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.64 | 55.0 | 4.38e-01 | 100.0% | 62.1% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.62 | 44.0 | 3.46e-01 | 86.2% | 33.8% |
| 4xsgB00 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.62 | 48.0 | 3.53e-01 | 89.2% | 99.0% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.61 | 51.0 | 4.24e-01 | 100.0% | 62.8% |
| 4kyxA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 51.0 | 4.13e-01 | 100.0% | 59.0% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.59 | 50.0 | 4.34e-01 | 100.0% | 69.8% |
| 2xvsA00 | 2.40.50.550 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 43.0 | 3.26e-01 | 80.0% | 81.9% |
| 1k2eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 50.0 | 3.94e-01 | 100.0% | 62.5% |
| 2azwA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 46.0 | 3.68e-01 | 100.0% | 56.2% |
| 2x8xX03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 46.0 | 4.34e-01 | 100.0% | 91.6% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 37.0 | 2.55e-01 | 80.0% | 18.1% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 3.60e-01 | 81.5% | 74.7% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 46.0 | 3.58e-01 | 100.0% | 90.0% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.52 | 36.0 | 2.67e-01 | 93.8% | 27.2% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.52 | 41.0 | 3.22e-01 | 89.2% | 48.3% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 37.0 | 2.80e-01 | 90.8% | 27.3% |
| 1vh7A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 35.0 | 2.47e-01 | 73.8% | 58.4% |
| 2x8xX01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 43.0 | 4.16e-01 | 100.0% | 86.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936305 | 375.1.1.332 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › WH_Lhr | 0.82 | 59.0 | 6.43e-01 | 100.0% | 89.1% |
| 5035867 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.82 | 59.0 | 6.35e-01 | 100.0% | 89.1% |
| 4956395 | 239.1.1.7 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Lhr_WH | 0.80 | 58.0 | 6.23e-01 | 100.0% | 89.1% |
| 3180421 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.77 | 59.0 | 5.78e-01 | 100.0% | 75.7% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.73 | 58.0 | 6.02e-01 | 100.0% | 91.7% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.70 | 60.0 | 5.51e-01 | 100.0% | 72.3% |
| 3790843 | 325.1.8.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N | 0.68 | 40.0 | 4.22e-01 | 100.0% | 65.0% |
| 4946739 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.64 | 47.0 | 4.74e-01 | 100.0% | 80.0% |
| 3941125 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.62 | 50.0 | 3.82e-01 | 100.0% | 38.6% |
| 4298531 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.62 | 52.0 | 4.43e-01 | 100.0% | 80.0% |
| 3652079 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 47.0 | 3.92e-01 | 100.0% | 50.4% |
| 5049040 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.58 | 45.0 | 3.80e-01 | 98.5% | 50.0% |
| 4958890 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.58 | 42.0 | 4.00e-01 | 92.3% | 65.0% |
| 2146540 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.58 | 49.0 | 3.94e-01 | 100.0% | 60.4% |
| 3506518 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.57 | 44.0 | 3.83e-01 | 98.5% | 53.3% |
| 3824883 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.57 | 49.0 | 4.56e-01 | 100.0% | 89.4% |
| 3515226 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.56 | 46.0 | 3.94e-01 | 100.0% | 56.2% |
| 3505537 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.56 | 44.0 | 4.25e-01 | 100.0% | 76.0% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 42.0 | 2.78e-01 | 84.6% | 19.4% |
| 3669520 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.55 | 47.0 | 4.17e-01 | 100.0% | 96.0% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.55 | 41.0 | 3.93e-01 | 87.7% | 67.5% |
| 4021618 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.55 | 47.0 | 4.42e-01 | 98.5% | 78.8% |
| 4966854 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 2.67e-01 | 89.2% | 16.9% |
| 4931129 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 41.0 | 3.80e-01 | 92.3% | 65.9% |
| 3512351 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.53 | 42.0 | 3.76e-01 | 100.0% | 61.1% |
| 5035326 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.53 | 42.0 | 3.83e-01 | 92.3% | 65.6% |
| 3332597 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.52 | 40.0 | 2.88e-01 | 92.3% | 61.7% |
| 4932478 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.52 | 40.0 | 3.70e-01 | 89.2% | 67.8% |
| 4013718 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.51 | 42.0 | 3.26e-01 | 100.0% | 65.1% |
| 4673176 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.51 | 43.0 | 4.19e-01 | 100.0% | 90.7% |
| 5067181 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 39.0 | 2.50e-01 | 90.8% | 17.8% |
| 3491318 | 2.1.1.72 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › POT1PC | 0.51 | 38.0 | 2.72e-01 | 80.0% | 57.0% |
| 3387642 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.51 | 42.0 | 4.05e-01 | 100.0% | 91.3% |