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MW084976.1__QOV08318.1__Kirov_119__00119
Bact-VirMW084976.1__QOV08318.1__Kirov_119__00119
Identity
- Accession:
- MW084976 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Taxonomy
TaxID: 2783539
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-82
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 41.0 | 3.75e-01 | 70.7% | 45.4% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.65 | 49.0 | 3.58e-01 | 79.3% | 98.6% |
| 5kfzA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 49.0 | 4.31e-01 | 82.9% | 85.4% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 45.0 | 4.05e-01 | 78.0% | 85.2% |
| 4r9iA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.58 | 48.0 | 3.29e-01 | 89.0% | 99.6% |
| 3ijmA00 | 3.90.1570.20 | Alpha Beta › Alpha-Beta Complex › tt1808, chain A › | 0.58 | 47.0 | 3.94e-01 | 90.2% | 93.8% |
| 2a8eA00 | 3.30.930.20 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 | 0.57 | 48.0 | 3.61e-01 | 93.9% | 81.9% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 51.0 | 4.32e-01 | 100.0% | 88.9% |
| 4fvaC00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.57 | 45.0 | 3.13e-01 | 84.1% | 49.4% |
| 1vkvA01 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.54 | 39.0 | 3.05e-01 | 81.7% | 35.0% |
| 3egeA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.70e-01 | 75.6% | 47.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3809654 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.69 | 51.0 | 3.12e-01 | 79.3% | 77.7% |
| 3599479 | 3910.1.1.1 ↗ | extended segments › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › Exosome complex exonuclease RRP6 N-terminal domain › PMC2NT | 0.67 | 47.0 | 4.39e-01 | 87.8% | 60.0% |
| 3579155 | 168.1.1.0 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain | 0.65 | 53.0 | 4.42e-01 | 85.4% | 72.6% |
| 4525882 | 3747.1.1.3 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C | 0.65 | 46.0 | 4.20e-01 | 73.2% | 67.6% |
| 3203073 | 867.1.1.1 ↗ | a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coprogen_oxidas | 0.64 | 48.0 | 3.11e-01 | 80.5% | 63.2% |
| 4973585 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.63 | 50.0 | 3.23e-01 | 86.6% | 24.0% |
| 4480064 | 241.12.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 | 0.60 | 51.0 | 3.84e-01 | 93.9% | 84.0% |
| 4647466 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.60 | 51.0 | 3.43e-01 | 93.9% | 69.2% |
| 5035881 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.59 | 48.0 | 3.41e-01 | 91.5% | 77.0% |
| 3504326 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.58 | 49.0 | 4.10e-01 | 95.1% | 82.1% |
| 4064250 | 241.12.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 | 0.58 | 48.0 | 3.66e-01 | 93.9% | 82.8% |
| 3239836 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.57 | 51.0 | 4.20e-01 | 100.0% | 75.3% |
| 4556841 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 36.0 | 2.57e-01 | 76.8% | 19.6% |
| 5082337 | 7576.1.1.0 ↗ | a/b three-layered sandwiches › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain | 0.57 | 44.0 | 3.86e-01 | 85.4% | 81.5% |
| 4520130 | 601.23.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III | 0.56 | 49.0 | 3.30e-01 | 98.8% | 65.0% |
| 3958841 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 46.0 | 3.99e-01 | 95.1% | 75.4% |
| 4043620 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.53 | 46.0 | 3.65e-01 | 100.0% | 67.8% |
| 3238753 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 37.0 | 2.96e-01 | 75.6% | 40.6% |
D2
medium
residues 83-168
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xjkA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.62 | 45.0 | 2.69e-01 | 75.6% | 71.8% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.58 | 36.0 | 3.21e-01 | 76.7% | 43.0% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 36.0 | 3.61e-01 | 95.3% | 60.4% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 43.0 | 3.83e-01 | 86.0% | 88.3% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 42.0 | 3.72e-01 | 87.2% | 70.0% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.52 | 28.0 | 2.68e-01 | 76.7% | 41.4% |
| 4hd5A01 | 2.60.40.3760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 32.0 | 3.11e-01 | 83.7% | 52.6% |
| 1f6fB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.17e-01 | 80.2% | 56.7% |
| 4p9iA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.51 | 37.0 | 3.08e-01 | 79.1% | 82.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011475 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 57.0 | 4.55e-01 | 91.9% | 49.1% |
| 4939728 | 2008.1.1.77 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C | 0.65 | 50.0 | 4.35e-01 | 83.7% | 96.3% |
| 4952184 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 38.0 | 3.42e-01 | 89.5% | 50.4% |
| 5012155 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.54 | 36.0 | 3.80e-01 | 93.0% | 79.7% |
| 4890112 | 2484.1.1.327 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Spt6_S1 | 0.53 | 33.0 | 2.95e-01 | 86.0% | 44.2% |
| 5039455 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.52 | 35.0 | 3.19e-01 | 89.5% | 49.6% |
| 5018023 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.50 | 36.0 | 3.16e-01 | 93.0% | 48.9% |