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MW084976.1__QOV08425.1__Kirov_226__00226

Bact-Vir

MW084976.1__QOV08425.1__Kirov_226__00226

Identity

Accession:
MW084976 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kirovvirus› Bacillus_phage_Kirov

TaxID: 2783539

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-55
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 50.0 3.81e-01 88.7% 88.9%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 47.0 4.25e-01 81.1% 87.8%
3hhmA03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 53.0 4.02e-01 100.0% 69.5%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 54.0 4.90e-01 100.0% 79.5%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.62 52.0 4.35e-01 100.0% 95.9%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 47.0 3.59e-01 88.7% 87.4%
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.61 43.0 3.84e-01 77.4% 61.4%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 53.0 4.12e-01 100.0% 69.7%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 3.45e-01 77.4% 91.4%
4tq1A02 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 52.0 4.41e-01 100.0% 83.5%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 51.0 4.25e-01 100.0% 85.7%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.54e-01 100.0% 71.2%
1k28D04 3.30.1920.40 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.59 34.0 3.23e-01 100.0% 46.9%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 51.0 4.57e-01 100.0% 94.7%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.58 47.0 3.51e-01 96.2% 71.8%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 50.0 4.42e-01 100.0% 96.2%
6klwF03 3.10.20.110 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 48.0 3.94e-01 100.0% 92.7%
2darA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 39.0 3.63e-01 73.6% 86.1%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 49.0 4.67e-01 100.0% 83.1%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.57 46.0 2.91e-01 92.5% 16.9%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.56 48.0 4.23e-01 100.0% 94.0%
4kdiD00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.34e-01 100.0% 96.0%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.55 41.0 2.90e-01 88.7% 67.1%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.34e-01 90.6% 92.8%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.54 43.0 3.45e-01 92.5% 53.4%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.57e-01 98.1% 87.9%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 3.20e-01 88.7% 39.7%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.29e-01 84.9% 73.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.25e-01 94.3% 71.8%
2dx0A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.09e-01 100.0% 39.3%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.50 40.0 2.62e-01 100.0% 84.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.83 61.0 4.17e-01 77.4% 44.6%
3721095 3174.2.1.0 ↗ beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.76 60.0 6.38e-01 98.1% 100.0%
4031064 4999.1.1.0 ↗ beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like 0.70 50.0 4.95e-01 92.5% 74.5%
4995785 221.3.1.0 ↗ a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.62 55.0 5.46e-01 100.0% 100.0%
3801584 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.62 54.0 4.42e-01 100.0% 84.0%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 4.24e-01 100.0% 73.6%
5077568 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.61 49.0 4.64e-01 100.0% 82.9%
3248299 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.60 46.0 2.74e-01 88.7% 11.7%
3212396 221.1.1.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DIX 0.59 50.0 4.48e-01 100.0% 96.2%
3264641 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.59 49.0 2.89e-01 100.0% 11.4%
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.58 46.0 3.63e-01 94.3% 79.2%
3411471 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.97e-01 100.0% 29.7%
3434734 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.57 49.0 3.68e-01 100.0% 54.3%
3616223 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 49.0 4.34e-01 100.0% 80.0%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.57 46.0 3.50e-01 92.5% 37.7%
4598583 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.56 45.0 3.29e-01 98.1% 61.7%
3674588 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.56 44.0 3.39e-01 98.1% 67.5%
4025577 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.55 41.0 3.02e-01 90.6% 51.9%
3456894 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.55 44.0 3.30e-01 98.1% 65.8%
3715657 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.54 45.0 3.69e-01 100.0% 50.5%
4599953 3292.1.1.0 ↗ a+b complex topology › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain › Adenine deaminase 2 C-terminal domain 0.54 41.0 2.94e-01 92.5% 90.1%
3888557 214.1.1.7 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.54 41.0 3.23e-01 88.7% 52.3%
3217257 11.1.1.955 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.53 44.0 3.74e-01 100.0% 62.0%
3595945 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 47.0 4.42e-01 100.0% 87.5%
3449977 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.53 43.0 3.57e-01 100.0% 92.7%
3731030 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.53 44.0 3.40e-01 100.0% 41.7%
4579024 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.52 42.0 4.12e-01 100.0% 87.9%
3705453 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 40.0 2.78e-01 100.0% 80.4%
3604240 71.1.1.25 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF6612 0.51 39.0 2.77e-01 90.6% 68.1%
5015646 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 30.0 3.18e-01 90.6% 62.2%
3600347 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.51 44.0 3.50e-01 98.1% 50.9%
4082864 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 40.0 3.33e-01 92.5% 61.9%
3281112 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.50 38.0 3.05e-01 86.8% 81.7%
3473780 239.3.1.0 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.50 39.0 3.03e-01 96.2% 71.3%