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MW117965.1__QPB07894.1__X__00057

Bact-Vir

MW117965.1__QPB07894.1__X__00057

Identity

Accession:
MW117965 ↗
Kingdom:
phage

Quality

49.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Yellowseavirus› Synechococcus_phage_S-H38

TaxID: 2783673

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 961-1099
PDB
Domain cluster: rep: NC_048757.1__YP_009844891.1__HWC13_gp082__00082__D259-407
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 31.0 3.87e-01 100.0% 69.3%
2qm1B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 33.0 3.22e-01 100.0% 44.1%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 32.0 2.66e-01 100.0% 30.3%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 30.0 2.74e-01 100.0% 41.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3263338 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.75 71.0 6.37e-01 100.0% 90.2%
4072881 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.54 30.0 3.74e-01 76.3% 91.3%
1949795 2484.1.1.11 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.53 29.0 3.36e-01 100.0% 74.5%
D2 medium residues 181-277
PDB
D3 medium residues 766-923
PDB
Domain cluster: rep: NC_073481.1__YP_010756090.1__QEJ66_gp08__00008__D21-190
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18013.7 best Phage_lysozyme2 83.0 3.40e-23 94.9% 96.4%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ct5A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 71.0 7.13e-01 99.4% 93.7%
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.71 55.0 5.95e-01 99.4% 96.9%
2zycA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.68 45.0 5.31e-01 100.0% 99.1%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 54.0 5.67e-01 100.0% 96.5%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 50.0 5.46e-01 97.5% 97.0%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 52.0 5.26e-01 91.8% 98.1%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 49.0 5.05e-01 97.5% 94.1%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.51 33.0 3.87e-01 91.1% 97.1%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 34.0 3.58e-01 93.0% 75.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1253692 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.79 71.0 7.08e-01 100.0% 92.6%
3284481 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.70 59.0 6.25e-01 100.0% 100.0%
3317412 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.62 55.0 5.08e-01 99.4% 75.5%
1005039 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.58 49.0 4.99e-01 98.7% 91.8%
3572160 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 33.0 3.79e-01 79.1% 88.2%