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MW117965.1__QPB07937.1__X__00100

Bact-Vir

MW117965.1__QPB07937.1__X__00100

Identity

Accession:
MW117965 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-83
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.73 55.0 4.72e-01 100.0% 51.5%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 53.0 4.48e-01 100.0% 49.0%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.71 61.0 5.63e-01 98.4% 75.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.71 52.0 4.69e-01 77.4% 61.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.67 53.0 4.96e-01 96.8% 70.1%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.66 47.0 3.38e-01 75.8% 76.2%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 55.0 4.08e-01 96.8% 36.2%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.65 58.0 4.36e-01 100.0% 60.7%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 3.86e-01 83.9% 60.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 47.0 4.19e-01 80.6% 60.7%
4orlA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.82e-01 77.4% 44.5%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 43.0 3.75e-01 75.8% 75.5%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 53.0 4.27e-01 98.4% 65.9%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 4.11e-01 77.4% 64.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.55e-01 79.0% 53.5%
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.60 44.0 3.34e-01 80.6% 47.1%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.60 44.0 3.90e-01 82.3% 63.3%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.59 43.0 3.88e-01 80.6% 62.0%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 3.58e-01 100.0% 56.8%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.59 42.0 3.42e-01 77.4% 45.3%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 43.0 3.56e-01 82.3% 87.1%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 42.0 3.00e-01 79.0% 27.3%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.43e-01 100.0% 60.4%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.62e-01 88.7% 95.5%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.13e-01 75.8% 99.4%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.58 42.0 3.86e-01 80.6% 97.7%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 46.0 3.47e-01 91.9% 42.8%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.89e-01 93.5% 74.3%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.55 40.0 3.66e-01 77.4% 77.6%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.19e-01 79.0% 45.5%
1p49A03 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 46.0 3.90e-01 96.8% 74.1%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 43.0 3.45e-01 93.5% 80.1%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 43.0 3.74e-01 91.9% 75.5%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.68e-01 95.2% 53.5%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 38.0 2.95e-01 82.3% 45.4%
4gw9A02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.64e-01 87.1% 60.9%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 42.0 3.96e-01 98.4% 81.2%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 43.0 3.58e-01 96.8% 60.5%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 34.0 3.42e-01 75.8% 67.2%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.52e-01 95.2% 67.3%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 2.95e-01 80.6% 61.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 42.0 3.35e-01 100.0% 73.1%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.26e-01 80.6% 79.0%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.38e-01 98.4% 83.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3223140 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 63.0 5.12e-01 100.0% 59.2%
3737184 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.72 59.0 3.87e-01 88.7% 65.2%
6667 4221.1.1.1 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.71 61.0 5.68e-01 98.4% 76.9%
4871885 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.71 53.0 4.52e-01 100.0% 49.5%
3446490 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.70 59.0 3.61e-01 93.5% 38.5%
3607539 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.69 55.0 3.75e-01 87.1% 68.9%
None 0.69 58.0 3.57e-01 91.9% 48.3%
3470385 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.69 56.0 3.83e-01 88.7% 74.4%
3477241 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.69 58.0 3.81e-01 91.9% 75.5%
3631990 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 60.0 4.42e-01 100.0% 86.7%
4291202 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.67 59.0 3.66e-01 100.0% 52.0%
5011212 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 45.0 2.89e-01 71.0% 92.0%
3827973 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 58.0 3.69e-01 100.0% 37.8%
3462090 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.66 60.0 3.69e-01 100.0% 39.2%
3623481 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.65 52.0 3.83e-01 90.3% 32.8%
3580295 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 57.0 4.10e-01 98.4% 74.3%
3927894 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 46.0 3.64e-01 75.8% 55.6%
3258975 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.64 49.0 4.19e-01 100.0% 51.0%
3684112 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.64 57.0 3.59e-01 100.0% 27.4%
5011728 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.64 53.0 4.77e-01 100.0% 72.6%
3402087 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.64 50.0 3.78e-01 90.3% 35.9%
3806989 5.1.5.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.63 55.0 3.60e-01 100.0% 49.8%
3827726 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 57.0 3.65e-01 100.0% 42.1%
3262446 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.62 46.0 4.06e-01 80.6% 54.8%
4017732 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.61 52.0 3.95e-01 95.2% 39.3%
3793090 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 53.0 3.26e-01 100.0% 33.0%
3589333 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.22e-01 87.1% 68.4%
4889671 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.61 47.0 4.57e-01 83.9% 89.7%
4942828 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.61 46.0 3.40e-01 82.3% 73.2%
3472092 220.1.1.186 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CAYP2 0.60 50.0 3.68e-01 93.5% 75.3%
3606615 241.10.1.0 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.60 51.0 4.58e-01 100.0% 98.9%
3706487 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.60 51.0 3.12e-01 100.0% 69.1%
4578621 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.60 50.0 3.54e-01 100.0% 38.6%
3483784 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 51.0 4.37e-01 100.0% 69.5%
4983588 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 51.0 4.81e-01 98.4% 97.3%
3446031 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.58 46.0 3.38e-01 95.2% 72.0%
3509392 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 3.77e-01 100.0% 64.4%
4680387 1.1.10.0 beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) 0.57 45.0 4.13e-01 85.5% 77.5%
1296460 216.2.1.1 a+b two layers › UBC-like › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP-RP2 C-terminal domain › Thermo-DBP 0.57 48.0 4.15e-01 100.0% 58.5%
3701675 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 41.0 3.98e-01 75.8% 80.9%
4961528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.56e-01 80.6% 50.5%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.56 41.0 3.14e-01 80.6% 34.8%
3228176 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 3.63e-01 100.0% 69.4%
3666731 2003.1.5.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.56 40.0 2.53e-01 77.4% 60.3%
3187588 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.56 43.0 3.46e-01 88.7% 100.0%
3589823 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 42.0 4.24e-01 90.3% 89.2%
3618645 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 47.0 3.62e-01 100.0% 60.7%
3267720 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 45.0 4.10e-01 100.0% 76.7%
4982195 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.54 40.0 3.24e-01 80.6% 45.4%
4942258 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.54 40.0 3.00e-01 82.3% 69.7%
3984944 213.2.1.0 a+b three layers › Nat/Ivy › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme, Ivy 0.54 39.0 3.55e-01 77.4% 63.5%
5045117 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.79e-01 74.2% 75.0%
3174685 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.52 43.0 3.06e-01 95.2% 98.0%
3742761 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.52 38.0 3.24e-01 82.3% 76.5%
3783782 213.1.1.11 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT 0.51 42.0 3.05e-01 93.5% 98.9%