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MW117965.1__QPB07958.1__X__00121
Bact-VirMW117965.1__QPB07958.1__X__00121
Identity
- Accession:
- MW117965 ↗
- Kingdom:
- phage
Quality
42.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Yellowseavirus›
Synechococcus_phage_S-H38
TaxID: 2783673
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 247-390
D2
high
residues 417-545
D3
high
residues 554-682
D4
high
residues 927-1035
Domain cluster:
rep: KJ019128.1__AIX38078.1__Syn7803US88_77__00077__D502-594
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.58 | 23.0 | 3.65e-01 | 78.0% | 93.3% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 33.0 | 3.75e-01 | 88.1% | 81.0% |
| 1d2oA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.52 | 34.0 | 3.49e-01 | 94.5% | 68.2% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.52 | 37.0 | 4.11e-01 | 97.2% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001401 | 304.8.1.8 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 | 0.55 | 35.0 | 3.86e-01 | 90.8% | 82.4% |
| 3612781 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.53 | 35.0 | 3.88e-01 | 87.2% | 88.2% |
| 4146323 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 35.0 | 3.84e-01 | 92.7% | 87.1% |
| 3742780 | 11.1.5.64 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PIG-X | 0.52 | 46.0 | 3.95e-01 | 100.0% | 75.0% |
| 3277862 | 304.120.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › RlmL_1st | 0.52 | 27.0 | 3.36e-01 | 91.7% | 88.3% |
| 3793391 | 304.28.1.30 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SCVP | 0.51 | 37.0 | 3.71e-01 | 91.7% | 74.5% |
| 4979735 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.51 | 33.0 | 3.55e-01 | 93.6% | 80.0% |
D5
medium
residues 138-237
D6
medium
residues 715-818
D7
medium
residues 827-913
D8
medium
residues 1322-1388