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MW145137.1__QPB11287.1__X__00014

Bact-Vir

MW145137.1__QPB11287.1__X__00014

Identity

Accession:
MW145137 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Providencia_phage_PSTNGR2lys

TaxID: 2783543

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-169
PDB
Domain cluster: rep: MK448940.1__QBX28202.1__Javan444_0040__00013__D85-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 47.2 2.80e-12 100.0% 38.6%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 44.0 3.70e-01 75.0% 40.4%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 46.0 5.25e-01 81.5% 97.1%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 42.0 3.65e-01 70.7% 41.7%
2qm1B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 42.0 3.55e-01 73.9% 39.5%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 42.0 3.94e-01 72.8% 53.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 39.0 4.48e-01 79.3% 83.3%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 44.0 3.71e-01 72.8% 43.1%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 41.0 3.91e-01 72.8% 54.1%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.63 46.0 4.68e-01 92.4% 77.8%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.63 42.0 2.83e-01 81.5% 17.8%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.62 49.0 4.75e-01 83.7% 79.4%
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.60 47.0 4.06e-01 83.7% 95.8%
2ex2A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 45.0 3.33e-01 83.7% 30.2%
1hkgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 3.86e-01 77.2% 90.0%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 40.0 3.86e-01 71.7% 69.4%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 41.0 4.23e-01 76.1% 91.1%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 39.0 3.75e-01 72.8% 72.0%
4v19S00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.56 41.0 3.59e-01 78.3% 74.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.55 44.0 3.79e-01 85.9% 72.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 32.0 3.62e-01 78.3% 77.6%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 37.0 4.11e-01 87.0% 95.5%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.31e-01 76.1% 50.0%
3bfmA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 42.0 3.42e-01 84.8% 86.0%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 37.0 3.29e-01 72.8% 100.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 34.0 2.99e-01 92.4% 40.4%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.67e-01 73.9% 84.5%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.80e-01 73.9% 84.9%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.81e-01 90.2% 81.9%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.72e-01 90.2% 83.8%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 40.0 2.75e-01 85.9% 24.6%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 37.0 3.65e-01 77.2% 87.9%
3qt2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.58e-01 75.0% 86.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3982792 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 1.00 97.0 7.88e-01 98.9% 67.3%
5004275 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.95 80.0 7.62e-01 88.0% 98.1%
3951937 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.75 50.0 5.12e-01 72.8% 69.7%
3281275 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.74 47.0 4.47e-01 72.8% 54.5%
3435911 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.73 52.0 4.85e-01 83.7% 60.9%
3370663 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.69 38.0 4.62e-01 71.7% 83.1%
3602244 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 62.0 5.32e-01 100.0% 86.1%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.67 45.0 5.02e-01 82.6% 90.0%
5046366 2484.1.1.79 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Raco_middle 0.67 46.0 3.79e-01 70.7% 50.0%
3420092 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 54.0 5.80e-01 87.0% 98.8%
3832602 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.67 50.0 4.72e-01 80.4% 66.4%
5024203 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.67 46.0 4.65e-01 83.7% 72.2%
4991274 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.66 52.0 5.19e-01 83.7% 91.6%
4319373 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.66 43.0 4.08e-01 73.9% 55.5%
4203071 2484.1.1.175 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N+FGGY_C 0.65 50.0 3.04e-01 80.4% 20.2%
4161565 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 50.0 5.03e-01 83.7% 81.1%
1149586 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.64 41.0 3.74e-01 72.8% 47.2%
3615747 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 50.0 3.85e-01 85.9% 49.0%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 36.0 4.15e-01 82.6% 81.5%
4669171 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.62 41.0 2.96e-01 72.8% 23.9%
3611339 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.84e-01 89.1% 89.4%
4986263 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 3.76e-01 78.3% 53.5%
4930329 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 32.0 4.02e-01 72.8% 92.0%
3857670 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.60 45.0 3.52e-01 81.5% 60.9%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.60 48.0 4.54e-01 85.9% 89.1%
3770448 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 45.0 3.76e-01 81.5% 63.5%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.59 46.0 3.92e-01 83.7% 82.7%
3743289 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 45.0 4.29e-01 82.6% 87.6%
4064214 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 36.0 4.11e-01 87.0% 87.7%
5011583 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.57 47.0 3.69e-01 89.1% 54.2%
4031833 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 31.0 3.78e-01 71.7% 83.3%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 43.0 4.26e-01 82.6% 88.0%
3435087 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.56 42.0 3.89e-01 79.3% 86.1%
3677752 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.56 42.0 3.17e-01 79.3% 44.0%
3199325 241.1.1.11 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Med14 0.55 38.0 3.13e-01 73.9% 66.1%
4498611 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 45.0 3.54e-01 89.1% 52.1%
4014982 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 46.0 3.22e-01 95.7% 80.6%
5051305 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 41.0 3.75e-01 81.5% 60.8%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.53 39.0 3.74e-01 78.3% 67.3%
3496967 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.39e-01 77.2% 74.3%
4263140 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 36.0 4.09e-01 87.0% 94.3%
5037801 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.80e-01 90.2% 76.4%
3594434 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.41e-01 90.2% 52.6%
4986577 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.52 37.0 3.47e-01 88.0% 61.8%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.55e-01 72.8% 86.3%
3224246 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 37.0 3.57e-01 76.1% 90.4%
4024807 206.1.1.87 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 0.50 40.0 2.93e-01 89.1% 36.9%
4649119 2484.1.1.153 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.50 36.0 2.57e-01 73.9% 53.1%
4093002 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.50 39.0 3.71e-01 83.7% 69.1%
D2 high residues 183-228
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1khvA05 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.75 65.0 5.09e-01 100.0% 46.4%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.72 59.0 4.11e-01 100.0% 27.3%
1kf6C00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.67 55.0 3.93e-01 91.3% 70.0%
1lwjA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 57.0 3.44e-01 100.0% 28.5%
2qw6D00 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.65 52.0 4.35e-01 93.5% 93.0%
1gu9C00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 54.0 3.75e-01 100.0% 27.4%
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.62 50.0 4.88e-01 100.0% 88.7%
4j6eA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 41.0 3.08e-01 89.1% 25.6%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.59 46.0 3.55e-01 100.0% 64.7%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 48.0 2.80e-01 97.8% 10.5%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.70e-01 100.0% 87.0%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.57 44.0 3.51e-01 100.0% 68.6%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.54 43.0 3.55e-01 95.7% 47.4%
2h09A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.52 37.0 3.52e-01 76.1% 62.5%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.51 41.0 3.85e-01 97.8% 75.4%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315111 4354.1.1.1 ↗ a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.82 73.0 4.92e-01 100.0% 29.4%
3347496 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 68.0 4.70e-01 95.7% 30.0%
3920021 4156.1.1.2 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C 0.79 62.0 3.84e-01 93.5% 16.9%
3602194 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.74 66.0 4.75e-01 100.0% 65.6%
4021910 101.1.2.519 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7791 0.68 55.0 3.63e-01 95.7% 70.5%
5016721 6132.1.1.14 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › PF29261 0.64 52.0 4.89e-01 97.8% 91.7%
2073547 621.1.1.2 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.63 50.0 4.70e-01 100.0% 75.4%
3967780 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.61 52.0 3.22e-01 100.0% 16.3%
4020426 3104.1.1.0 ↗ alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein 0.61 51.0 3.37e-01 100.0% 23.3%
3386043 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.56 43.0 3.27e-01 100.0% 36.6%
3717703 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 41.0 3.87e-01 93.5% 63.3%
D3 medium residues 5-56
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 40.0 3.14e-01 84.6% 28.3%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 3.39e-01 75.0% 37.1%
1xg7B01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.62 50.0 4.30e-01 100.0% 69.8%
3dfgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 4.11e-01 78.8% 70.8%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 37.0 2.60e-01 100.0% 18.6%
6p10B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 51.0 4.29e-01 100.0% 75.8%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 2.91e-01 75.0% 26.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 3.74e-01 94.2% 58.2%
7o1rA01 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.57 47.0 3.22e-01 96.2% 28.1%
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.57 49.0 3.48e-01 100.0% 92.6%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 46.0 3.57e-01 92.3% 82.5%
3rrwA02 1.20.58.1620 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 37.0 3.51e-01 76.9% 52.9%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.50e-01 80.8% 97.6%
1e5rB02 1.10.1720.10 Mainly Alpha › Orthogonal Bundle › Proline Oxidase; Chain: A, Domain 2 › L-proline 3-hydroxylase, C-terminal domain 0.55 38.0 3.34e-01 78.8% 46.4%
7z7vE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.55 35.0 3.39e-01 75.0% 56.7%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 46.0 3.12e-01 96.2% 32.8%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 45.0 4.04e-01 98.1% 68.4%
4qclA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.53 41.0 3.00e-01 90.4% 81.5%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 3.64e-01 100.0% 61.8%
4z4qA04 1.10.268.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 0.53 37.0 3.14e-01 88.5% 43.8%
2ivnA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.16e-01 100.0% 40.8%
2kzcA00 1.10.790.20 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 0.52 43.0 3.75e-01 96.2% 58.8%
2icgA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.52 43.0 3.19e-01 100.0% 35.2%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 42.0 3.24e-01 96.2% 84.0%
1ef4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 34.0 3.39e-01 84.6% 65.5%
1sxjD03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.50 42.0 3.55e-01 96.2% 59.3%
1ywqA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 42.0 2.85e-01 94.2% 82.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4236554 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 43.0 4.10e-01 82.7% 56.7%
3987405 101.1.1.202 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_21 0.66 41.0 3.43e-01 82.7% 36.7%
3999694 109.26.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_Nup160_C, TPR_NUP160_120_M 0.65 44.0 2.70e-01 96.2% 11.7%
3604457 4092.1.1.1 ↗ alpha arrays › Helical domain in PH0156-like proteins › Helical domain in PH0156-like proteins › Helical domain in PH0156-like proteins › DUF3226 0.65 52.0 4.43e-01 96.2% 73.7%
5051575 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.64 48.0 3.33e-01 82.7% 24.4%
3945813 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.62 54.0 3.89e-01 96.2% 70.7%
3691510 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.61 53.0 4.27e-01 100.0% 62.9%
4341780 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.60 48.0 4.49e-01 98.1% 70.8%
5067754 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 48.0 4.72e-01 98.1% 81.8%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.60 37.0 3.58e-01 82.7% 53.3%
5031662 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 42.0 3.25e-01 80.8% 32.0%
3787979 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.59 38.0 3.89e-01 98.1% 68.0%
3621809 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 44.0 4.09e-01 98.1% 62.9%
3485333 601.42.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain › PLAC8 0.59 43.0 3.68e-01 96.2% 45.3%
1851479 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.59 49.0 4.69e-01 98.1% 81.7%
5045747 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 42.0 3.63e-01 80.8% 57.8%
3371818 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.58 42.0 3.72e-01 80.8% 51.2%
3934086 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 44.0 3.86e-01 100.0% 52.9%
4644218 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.58 47.0 4.00e-01 90.4% 69.4%
4587778 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.58 44.0 3.37e-01 84.6% 68.0%
4987047 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.58 40.0 3.18e-01 78.8% 33.3%
4990055 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 43.0 4.23e-01 98.1% 76.4%
4927588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 36.0 3.23e-01 84.6% 44.0%
5023530 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.57 49.0 4.70e-01 98.1% 85.0%
2557383 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 46.0 3.67e-01 100.0% 52.0%
3887909 148.1.3.5 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Pol_alpha_B_N 0.56 45.0 4.13e-01 100.0% 66.7%
3261482 3939.1.1.0 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.56 39.0 3.59e-01 82.7% 53.3%
5077445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 2.94e-01 78.8% 30.1%
4971686 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 39.0 3.31e-01 80.8% 50.5%
3255275 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 40.0 3.83e-01 90.4% 66.7%
5075771 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 39.0 3.22e-01 80.8% 50.0%
4964084 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.55 40.0 3.14e-01 80.8% 61.7%
4001630 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.55 43.0 3.52e-01 96.2% 72.2%
3234027 101.1.1.75 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.54 39.0 3.77e-01 86.5% 66.7%
3885858 108.1.1.103 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6, EF-hand_7, EF-hand_8 0.54 45.0 3.74e-01 100.0% 63.0%
4982784 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.52 45.0 4.37e-01 100.0% 86.7%
3923977 148.1.1.10 ↗ alpha arrays › Histone-like › Histone-related › Histone › TAFII28 0.52 41.0 3.80e-01 94.2% 67.1%
5064993 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 42.0 3.31e-01 96.2% 90.8%
3840698 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.50 41.0 3.47e-01 100.0% 62.0%
4164573 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.50 41.0 3.20e-01 92.3% 79.1%
5049564 2006.1.4.50 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.50 38.0 2.79e-01 88.5% 71.7%