Back to structures

MW145137.1__QPB11295.1__X__00022

Bact-Vir

MW145137.1__QPB11295.1__X__00022

Identity

Accession:
MW145137 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-92
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 62.0 5.03e-01 100.0% 45.7%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.23e-01 100.0% 53.7%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 5.14e-01 100.0% 50.7%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 5.30e-01 100.0% 55.9%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 64.0 6.59e-01 100.0% 96.3%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.92e-01 90.8% 95.4%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 6.18e-01 100.0% 85.4%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 62.0 5.21e-01 100.0% 55.9%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 6.14e-01 100.0% 94.9%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 4.96e-01 100.0% 52.8%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.88e-01 100.0% 98.6%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 5.62e-01 86.2% 100.0%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 5.84e-01 100.0% 86.5%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 5.04e-01 87.4% 86.3%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.72e-01 98.9% 92.9%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.23e-01 97.7% 88.3%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 45.0 5.05e-01 87.4% 92.5%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 5.41e-01 93.1% 98.7%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 53.0 4.99e-01 93.1% 76.7%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 57.0 5.31e-01 98.9% 92.4%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 4.65e-01 89.7% 95.2%
7ewfB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 4.78e-01 93.1% 96.0%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 4.54e-01 100.0% 77.5%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 41.0 2.86e-01 82.8% 55.3%
16pkA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.54 38.0 2.93e-01 73.6% 86.5%
1y0kA00 3.40.1540.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein pa4535 › Protein of unknown function DUF1780, putative endonuclease 0.51 39.0 3.13e-01 81.6% 97.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 66.0 6.58e-01 100.0% 84.4%
4938897 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.78 60.0 6.42e-01 100.0% 93.3%
4981859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 53.0 6.14e-01 87.4% 95.4%
5078990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 52.0 6.11e-01 86.2% 100.0%
3415065 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.76 52.0 5.29e-01 86.2% 71.8%
4926980 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 5.66e-01 100.0% 81.2%
4109720 101.1.2.404 alpha arrays › HTH › HTH › winged helix domain › DUF505 0.75 61.0 6.04e-01 100.0% 82.2%
5021436 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.57e-01 92.0% 82.7%
3512683 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.94e-01 90.8% 96.9%
3566439 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.74 51.0 5.15e-01 86.2% 71.8%
5061096 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 51.0 5.30e-01 88.5% 76.2%
4990337 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 5.39e-01 98.9% 74.4%
3247158 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 54.0 5.77e-01 92.0% 88.0%
5005181 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 58.0 4.56e-01 100.0% 41.7%
3883340 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.73 52.0 5.61e-01 92.0% 85.3%
3986601 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.72 58.0 6.01e-01 100.0% 92.5%
3738688 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.71 53.0 5.72e-01 92.0% 90.7%
5072661 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 6.04e-01 100.0% 95.0%
5004890 101.1.2.195 alpha arrays › HTH › HTH › winged helix domain › Fic-like_C 0.70 56.0 5.87e-01 98.9% 92.5%
5071263 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.95e-01 100.0% 87.8%
2674 101.1.2.95 alpha arrays › HTH › HTH › winged helix domain › DsrD 0.70 51.0 5.46e-01 88.5% 89.2%
4404596 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.19e-01 100.0% 61.5%
3392391 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.69 50.0 5.32e-01 92.0% 88.0%
3286628 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.69 47.0 5.06e-01 89.7% 82.7%
4988184 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.69 58.0 5.73e-01 98.9% 86.7%
4524417 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.72e-01 100.0% 85.1%
3739748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 53.0 5.37e-01 100.0% 84.7%
3377235 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 5.13e-01 100.0% 75.8%
3250040 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 5.16e-01 94.3% 72.8%
3300362 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 4.82e-01 100.0% 53.5%
3320650 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.67 51.0 4.94e-01 100.0% 72.0%
4983791 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.66 53.0 4.55e-01 93.1% 56.2%
4979216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.56e-01 96.6% 88.9%
5059468 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 55.0 5.55e-01 98.9% 94.1%
5057571 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 54.0 5.42e-01 97.7% 90.0%
3275435 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 3.11e-01 87.4% 14.8%
3321732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 5.42e-01 100.0% 88.0%
3666427 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 53.0 4.45e-01 100.0% 52.9%
3781374 109.4.1.15 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.63 44.0 3.53e-01 74.7% 77.8%
3784214 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.62 51.0 5.10e-01 100.0% 85.6%
3636290 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.62 48.0 5.02e-01 97.7% 92.5%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.62 54.0 5.04e-01 100.0% 77.3%
3405208 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.27e-01 92.0% 97.5%
4133158 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.62 52.0 5.07e-01 97.7% 84.2%
3316941 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.62 56.0 5.08e-01 100.0% 76.5%
4262488 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 56.0 4.85e-01 100.0% 95.4%
3500577 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.61 50.0 5.22e-01 96.6% 97.5%
4950787 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.61 51.0 4.95e-01 100.0% 84.2%
5018207 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.60 54.0 5.01e-01 100.0% 85.5%
3956779 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 55.0 4.70e-01 100.0% 67.4%
4022512 101.1.2.359 alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.59 49.0 4.73e-01 100.0% 80.0%
3926829 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.52e-01 100.0% 78.2%
5012343 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.58 50.0 5.01e-01 97.7% 92.2%
3639498 101.1.2.722 alpha arrays › HTH › HTH › winged helix domain › DUF6581, PF28722 0.58 52.0 3.35e-01 100.0% 39.3%
3208511 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.57 51.0 3.50e-01 100.0% 54.2%
3738673 101.1.2.251 alpha arrays › HTH › HTH › winged helix domain › DUF6581 0.57 51.0 4.04e-01 100.0% 77.1%
3730314 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.53 40.0 2.97e-01 80.5% 39.6%
4570602 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 32.0 3.46e-01 78.2% 72.9%
4646939 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.52 39.0 2.86e-01 79.3% 29.4%
3260230 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 41.0 3.67e-01 90.8% 88.0%
D2 high residues 105-167
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.70 48.0 4.19e-01 100.0% 47.9%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 47.0 5.06e-01 79.4% 86.8%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 47.0 3.83e-01 85.7% 70.7%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.59 43.0 3.40e-01 76.2% 70.3%
3od1A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 38.0 2.47e-01 73.0% 15.9%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 42.0 3.46e-01 87.3% 74.8%
4jrfA03 1.10.20.150 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.50 39.0 3.37e-01 87.3% 86.8%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.50 38.0 3.22e-01 88.9% 77.2%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5006607 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.62 47.0 4.24e-01 79.4% 84.7%
3442073 143.1.1.0 alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.60 41.0 4.35e-01 81.0% 80.0%
3444184 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.60 42.0 4.29e-01 85.7% 76.7%
3586692 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.60 46.0 4.93e-01 96.8% 96.4%
4217669 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.59 44.0 2.93e-01 79.4% 33.7%
4932599 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.56 40.0 2.41e-01 77.8% 16.3%
3619816 2004.1.1.33 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind 0.54 43.0 2.89e-01 92.1% 93.2%
3594129 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 37.0 2.63e-01 76.2% 85.1%
3502146 5001.1.1.3 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.51 42.0 2.83e-01 96.8% 59.0%