←Back to structures

MW145138.1__QPB11380.1__X__00018

Bact-Vir

MW145138.1__QPB11380.1__X__00018

Identity

Accession:
MW145138 ↗
Kingdom:
phage

Quality

70.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Providencia_phage_Kokobel2

TaxID: 2783541

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.64 46.0 4.81e-01 100.0% 94.0%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.64 49.0 3.77e-01 84.7% 79.3%
1m4jA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 46.0 3.70e-01 94.9% 36.8%
5j3uA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 44.0 3.46e-01 94.9% 35.5%
2dt8A01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 42.0 3.18e-01 72.9% 90.6%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.60 41.0 2.81e-01 72.9% 56.6%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 44.0 3.61e-01 98.3% 40.2%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 48.0 3.31e-01 96.6% 97.5%
2iq1A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 47.0 3.16e-01 96.6% 98.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 48.0 3.54e-01 98.3% 89.8%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 39.0 3.23e-01 76.3% 47.1%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 47.0 3.77e-01 96.6% 82.0%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.45e-01 96.6% 38.4%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 43.0 2.94e-01 86.4% 88.6%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 40.0 3.11e-01 79.7% 83.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 47.0 4.09e-01 98.3% 90.2%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.55 40.0 3.34e-01 93.2% 45.9%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.68e-01 98.3% 52.3%
2wnvD00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.45e-01 96.6% 39.8%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 45.0 3.08e-01 98.3% 61.7%
2qyxA02 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.55 46.0 3.82e-01 100.0% 75.2%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 42.0 4.01e-01 100.0% 72.4%
1iuhA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.54 47.0 3.36e-01 100.0% 51.9%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.54 45.0 3.68e-01 100.0% 95.9%
3f8uB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.50e-01 98.3% 60.3%
3jtnB00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 38.0 3.35e-01 78.0% 71.1%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 37.0 3.04e-01 98.3% 35.0%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 43.0 3.22e-01 93.2% 47.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 43.0 3.83e-01 98.3% 89.4%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 43.0 3.78e-01 100.0% 77.6%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.42e-01 98.3% 50.0%
2i0oA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 40.0 2.64e-01 86.4% 35.2%
3qjhA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.60e-01 98.3% 61.7%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 41.0 3.25e-01 91.5% 98.5%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.23e-01 96.6% 55.7%
1wfjA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 40.0 3.17e-01 94.9% 41.1%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 37.0 2.76e-01 83.1% 36.3%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 35.0 3.14e-01 100.0% 46.3%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 40.0 3.49e-01 98.3% 53.8%
1nepA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.38e-01 98.3% 50.8%
1loxA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.50 40.0 3.44e-01 98.3% 74.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3446121 109.4.1.3478 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.66 46.0 2.62e-01 74.6% 13.0%
3322667 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.64 44.0 2.43e-01 72.9% 5.1%
3379402 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.61 42.0 2.39e-01 71.2% 7.9%
3831659 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.61 43.0 2.41e-01 72.9% 52.8%
5045308 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 42.0 3.06e-01 74.6% 88.9%
3383616 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.60 40.0 2.30e-01 71.2% 7.7%
5053150 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 47.0 3.44e-01 88.1% 89.0%
3821185 109.4.1.1476 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.58 46.0 2.62e-01 89.8% 7.8%
3818971 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.57 43.0 2.45e-01 79.7% 17.7%
3933905 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.57 43.0 3.46e-01 98.3% 37.1%
3371469 109.4.1.3022 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.56 40.0 2.32e-01 76.3% 14.6%
3677917 109.3.1.320 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase 0.56 40.0 3.07e-01 76.3% 65.9%
3780458 223.2.1.51 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Njmu-R1 0.55 38.0 3.05e-01 76.3% 53.8%
3678845 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 46.0 2.65e-01 93.2% 12.0%
3296178 109.4.1.1476 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.55 41.0 2.28e-01 79.7% 50.7%
None — 0.55 40.0 3.06e-01 76.3% 68.1%
3420651 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.55 40.0 2.51e-01 76.3% 26.8%
3833836 109.4.1.619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase 0.55 38.0 2.94e-01 72.9% 66.2%
3825001 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 41.0 2.31e-01 81.4% 16.7%
3370073 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.54 43.0 2.62e-01 88.1% 13.3%
3444049 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.53 44.0 2.56e-01 91.5% 14.3%
3443843 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 45.0 2.60e-01 94.9% 14.4%
4091593 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 45.0 3.47e-01 96.6% 100.0%
3832641 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.53 40.0 2.25e-01 79.7% 15.5%
3649476 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 38.0 2.41e-01 76.3% 22.6%
3307372 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 39.0 2.43e-01 81.4% 29.5%
3439118 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 40.0 2.31e-01 81.4% 19.0%
3830691 109.4.1.2337 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.52 40.0 2.36e-01 83.1% 21.4%
3434775 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 39.0 2.27e-01 81.4% 17.7%
3369937 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 39.0 2.24e-01 81.4% 16.3%
3933750 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.59e-01 100.0% 53.0%
3656048 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.51 38.0 2.14e-01 81.4% 12.6%
4946800 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 44.0 3.28e-01 98.3% 90.3%
3427946 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.50 42.0 2.41e-01 91.5% 12.1%