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MW145138.1__QPB11411.1__X__00049

Bact-Vir

MW145138.1__QPB11411.1__X__00049

Identity

Accession:
MW145138 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Providencia_phage_Kokobel2

TaxID: 2783541

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: rep: KP137437.1__AJA73301.1__1152AP2_16__00016__D45-106
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23812.2 best Phage_TAC_18 31.2 2.50e-07 98.1% 68.8%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.76 67.0 5.12e-01 100.0% 68.9%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 63.0 5.17e-01 100.0% 53.4%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.72 43.0 4.27e-01 73.1% 58.5%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 56.0 5.22e-01 92.3% 72.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 5.26e-01 100.0% 73.3%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.60e-01 94.2% 58.2%
2ly1A01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.67 54.0 4.88e-01 100.0% 91.1%
4behA01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 55.0 5.21e-01 98.1% 84.4%
5tcgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 53.0 3.45e-01 92.3% 26.1%
1ll1A01 1.20.1370.10 Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Hemocyanin, N-terminal domain 0.65 54.0 4.46e-01 100.0% 50.5%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 49.0 4.45e-01 86.5% 74.7%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.44e-01 98.1% 61.4%
2nt2A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.62 52.0 3.91e-01 100.0% 62.7%
3fy4C03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.62 48.0 3.34e-01 94.2% 60.4%
3hibA01 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.61 49.0 3.94e-01 98.1% 94.9%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.61 42.0 3.38e-01 73.1% 66.7%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 41.0 3.61e-01 71.2% 83.5%
2vj4A01 1.10.10.2060 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 51.0 4.35e-01 100.0% 57.8%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 51.0 4.49e-01 98.1% 73.4%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 48.0 4.21e-01 92.3% 86.4%
2lefA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.59 40.0 3.47e-01 71.2% 77.9%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.59 49.0 4.93e-01 98.1% 98.1%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 39.0 3.64e-01 71.2% 59.1%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.58 36.0 2.81e-01 73.1% 28.0%
3buxB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 45.0 3.83e-01 90.4% 67.4%
2cclB00 1.10.1330.10 Mainly Alpha › Orthogonal Bundle › Type 1 dockerin domain › Dockerin domain 0.56 44.0 4.26e-01 90.4% 98.4%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 45.0 3.69e-01 94.2% 66.0%
3op7A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 42.0 2.89e-01 92.3% 21.5%
1puzA00 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.55 37.0 3.32e-01 73.1% 52.4%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 42.0 4.18e-01 86.5% 83.0%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 36.0 3.38e-01 73.1% 54.4%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 2.76e-01 92.3% 16.3%
1uujA00 1.20.960.30 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.53 40.0 3.74e-01 94.2% 67.1%
3kheA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 42.0 3.42e-01 90.4% 90.7%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.52 35.0 3.38e-01 94.2% 57.8%
2ld7B00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.51 38.0 3.53e-01 88.5% 80.0%
2ctoA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.51 35.0 3.37e-01 73.1% 100.0%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.51 38.0 3.39e-01 82.7% 100.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712603 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.79 65.0 5.90e-01 92.3% 72.9%
4609007 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.71 57.0 5.83e-01 98.1% 98.0%
4093337 1091.1.1.0 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.71 60.0 5.92e-01 100.0% 98.2%
3971509 101.1.2.851 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27731 0.70 57.0 4.90e-01 96.2% 75.6%
3939242 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.69 59.0 5.71e-01 100.0% 88.3%
5011654 101.1.2.374 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.69 58.0 5.39e-01 100.0% 79.7%
None — 0.69 57.0 4.41e-01 100.0% 42.6%
4127805 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.68 56.0 4.16e-01 98.1% 38.0%
3970076 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 55.0 5.58e-01 94.2% 100.0%
3279756 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.68 55.0 4.23e-01 100.0% 39.3%
4031266 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.68 43.0 4.30e-01 71.2% 63.0%
4145524 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.67 53.0 5.05e-01 94.2% 80.0%
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 4.50e-01 100.0% 65.5%
5013924 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 54.0 4.72e-01 98.1% 63.3%
5080146 101.1.2.554 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30184 0.67 54.0 4.57e-01 98.1% 57.0%
4024282 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 48.0 4.38e-01 76.9% 61.4%
3757366 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.67 45.0 4.00e-01 71.2% 77.5%
5071383 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.65 45.0 3.06e-01 100.0% 18.6%
3261028 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.64 54.0 4.72e-01 100.0% 77.6%
4957413 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.64 50.0 5.05e-01 94.2% 100.0%
3737796 101.1.1.10 ↗ alpha arrays › HTH › HTH › Three-helical HTH › ARID 0.64 52.0 4.55e-01 100.0% 62.2%
3919967 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 50.0 4.91e-01 98.1% 86.7%
3475328 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.61 49.0 4.48e-01 98.1% 84.0%
3391047 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 46.0 4.55e-01 94.2% 86.7%
3668677 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.60 49.0 4.57e-01 100.0% 84.3%
3744736 2004.1.1.364 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.59 46.0 2.64e-01 92.3% 7.7%
4022512 101.1.2.359 ↗ alpha arrays › HTH › HTH › winged helix domain › GPIID_WHD 0.59 48.0 4.06e-01 100.0% 66.0%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.57 38.0 3.32e-01 71.2% 68.7%
3834278 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.57 46.0 4.44e-01 100.0% 89.2%
3308724 3721.1.1.2 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 0.55 38.0 3.16e-01 71.2% 41.1%
4015915 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.54 36.0 3.23e-01 71.2% 93.8%