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MW145139.1__QPB11456.1__X__00029

Bact-Vir

MW145139.1__QPB11456.1__X__00029

Identity

Accession:
MW145139 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-52
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24227.2 best DUF7443 79.0 2.20e-22 100.0% 77.6%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e9xD02 3.40.5.60 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.73 62.0 5.83e-01 97.9% 88.3%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.70 59.0 5.66e-01 100.0% 84.5%
3danA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 46.0 2.63e-01 70.8% 14.2%
3jc6C00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 56.0 3.94e-01 97.9% 30.8%
4mp4A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 36.0 2.93e-01 85.4% 27.0%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 50.0 3.12e-01 97.9% 14.4%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 42.0 3.25e-01 72.9% 86.0%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 52.0 3.85e-01 97.9% 37.5%
4iv9A03 1.10.405.40 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › 0.60 44.0 3.19e-01 81.2% 96.6%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 38.0 2.70e-01 95.8% 20.7%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 45.0 3.28e-01 85.4% 93.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 44.0 3.44e-01 81.2% 77.3%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 43.0 3.42e-01 81.2% 78.6%
1jb0D00 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.58 45.0 3.45e-01 97.9% 41.3%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 3.70e-01 100.0% 97.5%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 47.0 3.64e-01 97.9% 42.0%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 44.0 3.60e-01 85.4% 73.1%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.70e-01 97.9% 76.6%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 44.0 3.64e-01 89.6% 80.9%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 45.0 3.81e-01 100.0% 78.4%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 46.0 3.67e-01 97.9% 44.9%
3ng0A02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.54 42.0 2.66e-01 100.0% 37.2%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 44.0 3.77e-01 100.0% 85.6%
1vb5B02 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.54 44.0 3.02e-01 93.8% 92.3%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 43.0 3.51e-01 97.9% 45.2%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 43.0 2.76e-01 89.6% 97.1%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 2.83e-01 100.0% 63.7%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.58e-01 97.9% 55.7%
3x1lB02 3.30.1040.70 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.52 38.0 3.60e-01 83.3% 82.5%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 39.0 2.75e-01 89.6% 90.3%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 35.0 2.47e-01 77.1% 35.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000438 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 64.0 5.71e-01 97.9% 65.7%
5066664 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.77 61.0 6.26e-01 93.8% 95.6%
4981952 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 62.0 6.21e-01 100.0% 92.0%
3716713 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 63.0 6.23e-01 97.9% 94.0%
5015232 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 63.0 6.06e-01 100.0% 85.5%
4004354 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.74 65.0 4.67e-01 100.0% 64.4%
4927873 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 60.0 5.67e-01 97.9% 75.0%
4994655 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 62.0 6.15e-01 97.9% 96.0%
4939413 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 60.0 5.98e-01 95.8% 98.0%
5024995 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.72 59.0 5.77e-01 97.9% 86.8%
3691283 4076.3.1.9 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF1_C 0.71 59.0 5.92e-01 100.0% 94.0%
4007473 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.71 61.0 4.46e-01 100.0% 65.9%
4983060 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.69 56.0 4.86e-01 100.0% 57.5%
4932061 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.69 54.0 5.56e-01 95.8% 97.8%
4358525 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 54.0 5.41e-01 95.8% 88.0%
4967982 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 54.0 5.53e-01 95.8% 100.0%
3977412 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.68 57.0 5.68e-01 97.9% 100.0%
3923675 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.33e-01 100.0% 90.8%
4007792 10.12.1.115 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 0.68 56.0 4.20e-01 100.0% 63.0%
5001806 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.68 53.0 5.32e-01 95.8% 89.6%
4269273 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.67 54.0 5.53e-01 93.8% 97.8%
4944185 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.67 55.0 5.07e-01 97.9% 70.8%
4593896 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.67 50.0 5.10e-01 93.8% 93.3%
4081421 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 57.0 5.64e-01 100.0% 96.0%
4230268 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.67 53.0 5.40e-01 93.8% 97.8%
4083057 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 52.0 5.16e-01 100.0% 90.0%
4934987 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 50.0 5.13e-01 93.8% 93.3%
4951587 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 52.0 5.16e-01 100.0% 90.0%
5038458 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 50.0 4.97e-01 87.5% 94.0%
4460255 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 52.0 5.23e-01 100.0% 90.0%
5036149 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.66 51.0 5.24e-01 95.8% 97.8%
4939553 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.65 50.0 5.01e-01 97.9% 88.0%
5068408 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.65 50.0 5.06e-01 97.9% 97.8%
4419456 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.65 52.0 5.18e-01 95.8% 89.8%
4536596 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 51.0 5.15e-01 97.9% 93.8%
4993371 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.64 52.0 5.15e-01 100.0% 92.0%
4280403 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.64 49.0 5.00e-01 93.8% 95.6%
5010676 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.64 51.0 5.13e-01 97.9% 92.0%
1346119 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.64 51.0 5.07e-01 97.9% 90.2%
5027046 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 50.0 5.03e-01 100.0% 92.0%
4641420 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.63 51.0 4.29e-01 97.9% 51.1%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 5.03e-01 100.0% 95.0%
4200990 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 50.0 4.95e-01 100.0% 90.0%
4057802 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 48.0 4.92e-01 95.8% 95.6%
3505111 4.1.1.318 beta barrels › SH3 › SH3 › SH3 › PF26085 0.62 51.0 4.27e-01 100.0% 63.4%
5061797 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.59 44.0 4.62e-01 87.5% 100.0%
3605370 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 38.0 3.62e-01 75.0% 83.3%
3585983 10.12.1.97 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CNBH_CNNM2_C 0.55 45.0 3.12e-01 97.9% 44.7%
4985875 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 37.0 3.68e-01 75.0% 68.0%
4154019 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 43.0 2.86e-01 95.8% 71.0%
1606781 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 38.0 3.63e-01 83.3% 65.5%
3365872 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 45.0 2.89e-01 100.0% 34.3%
3872543 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 40.0 2.49e-01 83.3% 21.4%
3991044 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.53 42.0 3.32e-01 95.8% 98.3%
3600578 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 41.0 2.35e-01 95.8% 26.6%
4013810 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.65e-01 97.9% 78.9%
3994590 102.1.3.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.52 35.0 2.45e-01 70.8% 80.6%
4943312 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 40.0 2.66e-01 95.8% 69.4%
3199589 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.54e-01 95.8% 76.7%
3968472 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 35.0 2.53e-01 75.0% 80.6%
None 0.51 41.0 2.35e-01 100.0% 57.1%
4022961 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 2.86e-01 100.0% 25.2%
4964256 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.84e-01 81.2% 38.4%
4972387 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 38.0 2.49e-01 83.3% 27.1%
4945914 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.50 39.0 2.64e-01 95.8% 73.5%
4962604 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.50 36.0 3.37e-01 79.2% 93.8%