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MW147367.1__QPB08297.1__X__00020

Bact-Vir

MW147367.1__QPB08297.1__X__00020

Identity

Accession:
MW147367 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Yushanluvirus› Synechococcus_phage_S-H9-2

TaxID: 2783669

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 108-252
PDB
Domain cluster: rep: NC_001902__NP_046981.1__psiM2p27__00027__D58-215
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 45.0 4.89e-01 97.2% 83.6%
4ca9A00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.65 39.0 4.57e-01 100.0% 86.7%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 59.0 5.05e-01 100.0% 96.9%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 59.0 5.02e-01 100.0% 97.4%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 52.0 5.48e-01 93.8% 99.2%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.62 57.0 5.58e-01 100.0% 93.5%
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 5.01e-01 100.0% 98.2%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 56.0 5.60e-01 100.0% 96.0%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 4.85e-01 95.2% 82.3%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 53.0 5.32e-01 97.2% 93.2%
1y4wA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 55.0 5.33e-01 100.0% 92.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 52.0 5.30e-01 99.3% 98.6%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 4.21e-01 100.0% 95.5%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 54.0 4.87e-01 100.0% 96.0%
5gm0A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 49.0 5.18e-01 93.8% 100.0%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 5.23e-01 93.1% 100.0%
4ccdA03 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 52.0 4.73e-01 100.0% 95.0%
3rq0A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.36e-01 100.0% 99.6%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 4.37e-01 100.0% 88.3%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 43.0 4.70e-01 100.0% 100.0%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 4.60e-01 98.6% 86.5%
5fuiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 4.69e-01 100.0% 99.2%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 4.59e-01 100.0% 94.7%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 4.44e-01 97.2% 87.4%
4c4vB02 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.54 43.0 3.21e-01 85.5% 45.9%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 4.12e-01 86.9% 96.0%
1hq0A00 3.60.100.10 Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain 0.53 41.0 3.31e-01 82.1% 72.2%
5ctnA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 38.0 3.27e-01 73.8% 100.0%
2w3jA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 4.55e-01 100.0% 93.4%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.30e-01 97.2% 76.5%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 4.09e-01 98.6% 86.6%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 39.0 3.81e-01 78.6% 87.8%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 42.0 3.33e-01 86.2% 49.3%
3kg8A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 4.19e-01 82.8% 96.9%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 46.0 4.46e-01 100.0% 99.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038687 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 43.0 5.09e-01 100.0% 96.0%
5011693 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 57.0 5.04e-01 95.2% 98.5%
4978630 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 42.0 4.95e-01 97.9% 97.0%
4114695 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.63 57.0 4.65e-01 100.0% 86.9%
3928274 10.4.1.27 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF29839 0.62 38.0 4.49e-01 96.6% 88.0%
2102357 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.62 56.0 4.94e-01 100.0% 97.7%
3906069 10.1.1.20 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TSP_C 0.62 56.0 4.87e-01 100.0% 94.6%
3300921 207.1.1.190 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_13 0.61 51.0 3.49e-01 100.0% 26.6%
3961771 10.18.1.0 ↗ beta sandwiches › jelly-roll › VPA0735-like › VPA0735-like 0.60 50.0 3.53e-01 100.0% 29.9%
140148 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.60 51.0 5.01e-01 96.6% 85.2%
3679968 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 53.0 4.76e-01 100.0% 93.9%
3589313 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.58 52.0 4.73e-01 100.0% 96.5%
2448364 10.1.1.19 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_leg-like 0.57 51.0 4.59e-01 100.0% 97.2%
1148155 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.57 40.0 3.12e-01 71.0% 56.2%
5035505 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 38.0 4.21e-01 100.0% 86.1%
139039 12.3.1.25 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_36N 0.57 40.0 3.13e-01 71.0% 56.4%
4991389 10.1.1.117 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Thermopsin 0.57 49.0 4.04e-01 95.9% 79.9%
3393226 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.57 40.0 4.42e-01 73.1% 99.2%
4628506 222.1.1.12 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.56 46.0 4.23e-01 86.2% 76.8%
3288524 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.54 38.0 3.24e-01 87.6% 45.2%
5007185 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 43.0 4.36e-01 100.0% 84.1%
5023642 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.93e-01 88.3% 94.4%
4009987 5084.8.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.53 40.0 2.84e-01 85.5% 27.1%
3465157 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.53 44.0 3.27e-01 87.6% 39.2%
3352673 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.53 45.0 3.43e-01 91.0% 49.0%
4367518 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 40.0 3.25e-01 79.3% 68.1%
4115279 10.1.1.46 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › InhA-like_MAM 0.51 40.0 4.00e-01 100.0% 78.1%
5057318 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 40.0 4.32e-01 100.0% 98.4%
3180910 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 45.0 4.62e-01 100.0% 100.0%
D2 medium residues 44-79
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_050077-3300045988-Ga0495776_132136_4883_5203__D66-99
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.73 59.0 5.46e-01 100.0% 76.5%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.72 56.0 5.49e-01 100.0% 90.7%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.71 54.0 5.02e-01 100.0% 70.9%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.70 55.0 4.90e-01 91.7% 64.3%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 51.0 4.70e-01 86.1% 81.2%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 4.33e-01 83.3% 80.4%
2aaaA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 49.0 3.65e-01 94.4% 49.0%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.57 40.0 3.12e-01 83.3% 29.5%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 43.0 4.30e-01 94.4% 94.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.34e-01 86.1% 62.1%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 2.58e-01 100.0% 15.0%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 39.0 3.49e-01 97.2% 71.0%
4zdtC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 37.0 3.18e-01 88.9% 87.1%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 37.0 2.98e-01 86.1% 86.7%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.51 37.0 3.16e-01 86.1% 84.9%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.50 38.0 3.30e-01 83.3% 80.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2495545 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.90 80.0 4.41e-01 100.0% 8.1%
1107990 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.73 59.0 5.49e-01 100.0% 78.0%
5069323 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 51.0 4.78e-01 91.7% 74.0%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 52.0 4.84e-01 94.4% 76.0%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 51.0 4.66e-01 94.4% 76.4%
3245395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 46.0 2.68e-01 75.0% 10.6%
3989854 3761.1.1.4 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › CFSR 0.66 52.0 4.19e-01 100.0% 42.4%
3893051 391.1.1.5 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.65 48.0 4.83e-01 91.7% 85.7%
3987740 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.65 51.0 5.05e-01 100.0% 87.5%
4991056 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.64 49.0 4.49e-01 94.4% 65.5%
4512216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 50.0 4.59e-01 94.4% 78.0%
3958560 4279.1.1.1 ↗ a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC 0.61 45.0 3.68e-01 91.7% 47.1%
4975917 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.61 43.0 3.65e-01 83.3% 41.4%
5011248 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.59 42.0 3.68e-01 83.3% 46.2%
4983462 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 46.0 3.99e-01 97.2% 81.5%
4962338 375.1.1.234 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD 0.53 39.0 3.90e-01 83.3% 97.5%
3641402 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 35.0 2.51e-01 86.1% 62.3%
5044203 375.1.1.22 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD 0.53 36.0 3.64e-01 75.0% 90.0%
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.25e-01 88.9% 70.8%
3189250 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 42.0 3.57e-01 91.7% 84.6%
3790194 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.50 38.0 3.68e-01 91.7% 100.0%