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MW176033.1__QXO06672.1__SEA_EFFIE_540__00054

Bact-Vir

MW176033.1__QXO06672.1__SEA_EFFIE_540__00054

Identity

Accession:
MW176033 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-98
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 50.0 4.14e-01 76.5% 82.9%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 4.22e-01 72.9% 61.5%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 52.0 5.14e-01 100.0% 86.7%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.63 56.0 4.27e-01 100.0% 48.3%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 51.0 4.73e-01 97.6% 71.4%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 44.0 4.09e-01 74.1% 90.6%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 43.0 4.06e-01 71.8% 96.0%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.62 39.0 3.93e-01 77.6% 63.5%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.65e-01 70.6% 78.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 5.11e-01 95.3% 94.5%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 43.0 3.44e-01 72.9% 66.9%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.92e-01 71.8% 98.1%
3volA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.65e-01 74.1% 75.4%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 4.11e-01 72.9% 67.4%
1tz0B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 3.90e-01 74.1% 59.8%
4dj3B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 42.0 3.87e-01 72.9% 90.1%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.83e-01 74.1% 92.5%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 45.0 4.47e-01 88.2% 78.0%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 40.0 3.19e-01 72.9% 63.5%
3a7eA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 44.0 3.30e-01 96.5% 32.5%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.57e-01 75.3% 71.0%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.58 50.0 3.85e-01 100.0% 70.8%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 48.0 3.58e-01 97.6% 36.1%
2r4fA02 3.90.770.10 Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 0.57 49.0 3.79e-01 98.8% 58.3%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 39.0 3.51e-01 71.8% 83.2%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 38.0 3.02e-01 70.6% 77.4%
1gd8A00 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.57 51.0 4.74e-01 100.0% 97.1%
3cwfA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.81e-01 76.5% 90.7%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.57 32.0 3.35e-01 100.0% 57.1%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.83e-01 74.1% 98.0%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.56 46.0 3.78e-01 91.8% 50.3%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 40.0 3.53e-01 100.0% 49.6%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.93e-01 91.8% 68.0%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.49e-01 70.6% 93.9%
2vouA02 3.30.9.60 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.55 42.0 3.54e-01 90.6% 47.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.55 39.0 4.02e-01 77.6% 78.8%
5hwtB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 37.0 3.37e-01 70.6% 88.5%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 45.0 3.65e-01 91.8% 79.3%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.53e-01 83.5% 80.6%
6pzjA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 3.79e-01 97.6% 88.5%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.52 36.0 3.20e-01 74.1% 72.9%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 3.07e-01 71.8% 80.4%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.51 45.0 3.98e-01 97.6% 67.7%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 41.0 3.12e-01 91.8% 62.3%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.33e-01 74.1% 91.7%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 39.0 3.02e-01 85.9% 86.8%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.28e-01 74.1% 76.3%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 34.0 3.51e-01 70.6% 100.0%
3bqwA01 3.15.30.10 Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like 0.50 36.0 2.85e-01 77.6% 70.0%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.49e-01 98.8% 83.5%
5a2fA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.55e-01 91.8% 63.4%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627957 4956.1.1.0 a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.75 52.0 5.38e-01 72.9% 76.2%
5035326 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 50.0 4.94e-01 70.6% 68.9%
3931469 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 49.0 3.29e-01 78.8% 26.2%
4399650 223.1.1.59 a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.66 46.0 3.57e-01 71.8% 38.9%
4541933 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.66 48.0 3.88e-01 76.5% 71.2%
4047137 4956.1.1.1 a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.65 44.0 4.57e-01 71.8% 75.0%
4481035 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.64 46.0 3.65e-01 74.1% 55.8%
2330703 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.64 54.0 3.52e-01 92.9% 29.4%
5044941 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.63 44.0 4.06e-01 71.8% 95.2%
3973221 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.63 45.0 3.87e-01 74.1% 76.2%
3496425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 52.0 4.33e-01 100.0% 52.0%
4988451 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 44.0 3.95e-01 72.9% 80.9%
4929151 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.62 44.0 4.00e-01 74.1% 91.3%
3236961 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 43.0 3.89e-01 71.8% 93.0%
5052457 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.62 44.0 3.95e-01 74.1% 88.7%
5005723 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.62 44.0 3.03e-01 74.1% 33.2%
3982478 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 3.75e-01 75.3% 77.0%
3962603 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 44.0 4.08e-01 76.5% 78.2%
3970689 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 3.88e-01 76.5% 94.4%
3722829 9.23.1.5 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_5 0.60 42.0 3.32e-01 71.8% 84.8%
5053323 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 41.0 3.79e-01 71.8% 87.0%
4877694 304.51.1.3 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.60 41.0 3.70e-01 70.6% 73.5%
3514322 223.2.1.37 a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.60 43.0 3.44e-01 75.3% 55.8%
3978531 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.59 43.0 3.59e-01 77.6% 76.1%
4292516 207.2.1.58 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chlam_PMP+ChlamPMP_M 0.59 53.0 3.20e-01 100.0% 21.8%
4959378 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 41.0 3.80e-01 71.8% 94.3%
3808055 244.1.1.29 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › AAA_assoc 0.59 41.0 3.62e-01 71.8% 76.7%
4431434 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.58 42.0 3.37e-01 76.5% 60.0%
4963695 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 41.0 3.82e-01 75.3% 79.1%
1146732 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.58 41.0 3.68e-01 76.5% 89.1%
4957949 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 41.0 3.51e-01 74.1% 74.8%
5062772 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 40.0 3.75e-01 72.9% 76.2%
3816949 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 46.0 3.22e-01 89.4% 27.4%
3808918 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.57 38.0 4.33e-01 72.9% 96.7%
None 0.56 48.0 3.29e-01 95.3% 46.7%
3795831 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 40.0 4.36e-01 91.8% 95.6%
4028203 230.2.1.1 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.56 41.0 3.90e-01 76.5% 96.0%
3668360 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.56 43.0 3.75e-01 96.5% 52.6%
3716707 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.73e-01 94.1% 71.1%
3238782 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 48.0 3.70e-01 100.0% 41.4%
4342449 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.56 46.0 4.12e-01 91.8% 64.2%
4931451 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 39.0 3.61e-01 74.1% 79.1%
3280926 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.54 48.0 3.82e-01 98.8% 82.8%
4958220 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 38.0 3.37e-01 74.1% 78.5%
5050353 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 38.0 3.33e-01 74.1% 77.8%
3783417 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 36.0 3.39e-01 70.6% 94.7%
5046056 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 38.0 3.34e-01 75.3% 80.0%
3557844 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 36.0 3.31e-01 71.8% 91.3%
5004655 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 39.0 3.32e-01 78.8% 76.4%
5045309 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.52 36.0 3.38e-01 74.1% 80.9%
4980708 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 36.0 3.18e-01 74.1% 74.3%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 35.0 2.98e-01 72.9% 39.3%
5019574 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 37.0 3.39e-01 74.1% 82.6%
5044945 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 37.0 3.32e-01 75.3% 84.0%
3601580 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 2.58e-01 78.8% 20.0%
5045028 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 36.0 2.66e-01 74.1% 40.4%
4991352 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 43.0 3.08e-01 96.5% 35.1%
3966018 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 36.0 3.41e-01 74.1% 97.1%
4197937 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.51 35.0 3.14e-01 71.8% 72.5%
4959105 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 36.0 3.22e-01 75.3% 88.5%
3322115 230.2.1.1 a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.51 41.0 3.74e-01 89.4% 87.0%
2719766 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 36.0 3.11e-01 74.1% 75.9%
5002723 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 38.0 3.46e-01 78.8% 90.4%
4940969 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 36.0 3.68e-01 76.5% 85.9%
4959266 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.50 37.0 2.67e-01 78.8% 40.8%
5055900 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.50 35.0 3.08e-01 74.1% 72.9%
4958874 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 35.0 3.30e-01 74.1% 93.6%