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MW218148.1__QPI16955.1__X__00036

Bact-Vir

MW218148.1__QPI16955.1__X__00036

Identity

Accession:
MW218148 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_vB_StaM_SA1

TaxID: 2785444

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-84
PDB
Domain cluster: rep: MZ779063.1__UAJ17078.1__UFVDC4_00151__00150__D8-77
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 49.0 5.79e-01 77.6% 94.0%
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.74 62.0 5.26e-01 92.1% 80.5%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 45.0 4.52e-01 77.6% 67.1%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.56e-01 93.4% 66.3%
2q0oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.85e-01 77.6% 80.6%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 5.21e-01 77.6% 94.8%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.23e-01 94.7% 87.7%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.64 49.0 4.50e-01 81.6% 64.9%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 48.0 4.65e-01 84.2% 80.5%
4pzcA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 47.0 4.54e-01 82.9% 90.7%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.62 46.0 4.55e-01 80.3% 82.9%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 45.0 3.55e-01 77.6% 51.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.40e-01 94.7% 68.5%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.14e-01 92.1% 66.7%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.59e-01 94.7% 71.4%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 46.0 4.63e-01 93.4% 95.0%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.57 43.0 4.21e-01 81.6% 85.2%
4hhxA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.56 45.0 4.13e-01 90.8% 81.7%
2b4lA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 45.0 3.60e-01 94.7% 90.4%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.29e-01 80.3% 66.7%
1dxrL02 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.52 35.0 3.25e-01 85.5% 50.9%
1q2lA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 37.0 2.71e-01 77.6% 55.3%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 41.0 3.12e-01 90.8% 42.2%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 35.0 3.61e-01 80.3% 78.6%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980764 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.90 53.0 6.73e-01 80.3% 100.0%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.86 56.0 6.31e-01 80.3% 85.0%
3589089 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.86 56.0 4.96e-01 80.3% 48.6%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 51.0 6.17e-01 84.2% 94.0%
3313889 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 53.0 6.38e-01 82.9% 98.0%
5049604 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 56.0 6.46e-01 80.3% 94.5%
4978113 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.83 53.0 6.44e-01 78.9% 100.0%
4926838 101.43.1.0 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.82 55.0 5.90e-01 77.6% 80.0%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.82 52.0 6.25e-01 77.6% 98.0%
5027952 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 54.0 6.19e-01 77.6% 92.7%
5029224 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 53.0 5.90e-01 76.3% 85.0%
5079851 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 56.0 6.24e-01 77.6% 90.0%
2393452 101.43.1.1 ↗ alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › TerS_N 0.80 52.0 5.99e-01 76.3% 91.1%
4927588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 55.0 5.58e-01 71.1% 78.7%
5028095 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.80 53.0 4.73e-01 77.6% 49.5%
3910504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 51.0 6.04e-01 86.8% 100.0%
5049118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 56.0 5.99e-01 73.7% 86.2%
3723123 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 55.0 6.14e-01 72.4% 91.7%
3692546 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.78 50.0 6.01e-01 82.9% 100.0%
4958195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 52.0 5.95e-01 76.3% 94.5%
4929815 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 53.0 5.75e-01 71.1% 90.8%
3730184 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.78 50.0 5.71e-01 75.0% 90.9%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.78 54.0 5.80e-01 72.4% 86.2%
3189669 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 52.0 5.45e-01 80.3% 77.1%
5032641 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.75 62.0 5.47e-01 89.5% 91.8%
3721082 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.74 50.0 5.67e-01 93.4% 96.4%
1145762 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.74 62.0 5.17e-01 92.1% 76.2%
3506989 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 47.0 5.64e-01 81.6% 100.0%
3962579 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 4.36e-01 81.6% 42.1%
3987909 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.73 50.0 4.11e-01 72.4% 40.0%
3720299 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 56.0 5.27e-01 81.6% 85.6%
3504389 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 51.0 5.08e-01 75.0% 73.8%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 47.0 5.40e-01 86.8% 94.5%
3602874 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.71 56.0 4.20e-01 82.9% 77.7%
3740038 101.1.1.256 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.71 45.0 5.43e-01 82.9% 100.0%
3709551 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 5.50e-01 77.6% 93.3%
4977905 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 53.0 5.56e-01 93.4% 87.1%
3177267 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.70 57.0 5.20e-01 89.5% 88.0%
3584520 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 4.72e-01 81.6% 64.5%
5007660 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.69 46.0 4.94e-01 86.8% 81.5%
3200422 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.15e-01 92.1% 93.3%
4944094 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.68 60.0 4.71e-01 94.7% 88.7%
5062870 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 5.07e-01 90.8% 71.1%
3617137 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 47.0 5.33e-01 80.3% 100.0%
5065250 4156.1.1.7 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 0.68 56.0 4.63e-01 90.8% 79.3%
2491473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 47.0 4.51e-01 93.4% 63.7%
4966213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 45.0 4.79e-01 86.8% 83.1%
5079440 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 57.0 4.15e-01 93.4% 91.8%
5017698 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.65 49.0 5.21e-01 88.2% 93.8%
4530535 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.65 58.0 3.84e-01 98.7% 90.4%
5050956 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 59.0 3.78e-01 98.7% 86.7%
3506369 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.64 59.0 3.82e-01 98.7% 88.2%
3450729 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 4.92e-01 81.6% 85.7%
4929599 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.64 58.0 3.98e-01 97.4% 73.3%
5023957 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.64 49.0 4.84e-01 90.8% 78.8%
4969058 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.63 48.0 4.66e-01 84.2% 89.4%
5030453 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.63 56.0 3.91e-01 97.4% 73.2%
4105352 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.62 57.0 3.80e-01 98.7% 98.2%
5078617 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.63e-01 90.8% 69.5%
3963583 2008.1.1.67 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C 0.62 45.0 2.99e-01 76.3% 43.9%
5027917 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.62 55.0 3.82e-01 97.4% 72.9%
5005242 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.53 40.0 3.03e-01 81.6% 34.9%
4530474 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.51 36.0 3.63e-01 76.3% 81.2%
None — 0.51 46.0 3.54e-01 100.0% 53.6%