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MW239124.1__QQG32297.1__CkP1_0045__00045

Bact-Vir

MW239124.1__QQG32297.1__CkP1_0045__00045

Identity

Accession:
MW239124 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Karamvirus› Citrobacter_phage_CkP1

TaxID: 2799684

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: rep: OR327750.1__WMM91748.1__X__00255__D20-86
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25760.2 best Phage_RB18_ORF43 109.9 6.20e-32 97.1% 98.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vw4801 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.73 53.0 5.26e-01 77.1% 75.3%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.68 52.0 4.41e-01 82.9% 76.1%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.65 56.0 4.62e-01 100.0% 80.5%
4gs5A02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.63 46.0 4.03e-01 77.1% 67.6%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 45.0 4.34e-01 80.0% 70.5%
1ry6A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.59 41.0 2.74e-01 75.7% 45.1%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 49.0 3.91e-01 100.0% 75.9%
4yxtA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 44.0 3.56e-01 100.0% 40.1%
4f98A00 2.30.140.50 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 0.57 40.0 4.21e-01 71.4% 91.9%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 3.50e-01 74.3% 73.0%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 44.0 3.86e-01 88.6% 65.5%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.56 48.0 3.36e-01 100.0% 82.0%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.55 37.0 2.58e-01 91.4% 19.7%
5efrA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 40.0 3.85e-01 77.1% 69.1%
1u6eA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 40.0 3.25e-01 100.0% 38.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.54 37.0 3.86e-01 97.1% 79.4%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.54 46.0 3.26e-01 100.0% 93.1%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 44.0 3.22e-01 91.4% 62.7%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.53 45.0 3.03e-01 97.1% 50.5%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 46.0 3.42e-01 100.0% 96.4%
4a8jB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.11e-01 92.9% 83.2%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 39.0 3.79e-01 88.6% 68.7%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 41.0 2.94e-01 100.0% 27.6%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 43.0 4.12e-01 94.3% 79.5%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 39.0 3.23e-01 100.0% 40.9%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 45.0 3.31e-01 100.0% 64.6%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.83e-01 84.3% 97.5%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.51 41.0 3.41e-01 100.0% 48.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.51 41.0 3.04e-01 90.0% 68.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002718 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.68 42.0 3.35e-01 71.4% 30.3%
4434853 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.64 54.0 3.73e-01 92.9% 28.7%
4944871 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.63 39.0 3.33e-01 71.4% 35.8%
4957877 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 38.0 3.82e-01 74.3% 61.4%
4395757 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 38.0 3.10e-01 70.0% 33.1%
3448577 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.60 45.0 4.04e-01 98.6% 58.0%
4641382 4099.1.1.32 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF30019 0.59 40.0 3.15e-01 92.9% 30.3%
5082551 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.59 41.0 3.36e-01 72.9% 71.9%
3943661 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.59 47.0 4.22e-01 88.6% 82.0%
4399128 7581.1.1.30 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt, Thiolase_C 0.59 49.0 3.15e-01 94.3% 58.1%
4056097 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.58 49.0 3.82e-01 100.0% 71.2%
5016234 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 42.0 3.99e-01 81.4% 92.9%
3479321 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.56 45.0 2.93e-01 92.9% 43.1%
3517620 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 43.0 2.88e-01 85.7% 53.4%
3563894 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.55 42.0 2.55e-01 81.4% 53.2%
3218266 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.55 44.0 2.85e-01 90.0% 46.8%
3960213 304.156.1.5 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.55 45.0 3.96e-01 97.1% 85.2%
3684953 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.54 48.0 3.03e-01 100.0% 33.8%
4061408 109.4.1.1731 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.54 46.0 2.85e-01 100.0% 17.5%
3993311 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.54 44.0 3.72e-01 98.6% 90.4%
4968256 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 41.0 3.43e-01 87.1% 59.3%
3739386 109.4.1.3152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, TPR_16, TPR_19, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N 0.53 44.0 2.60e-01 98.6% 11.6%
3462526 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.53 46.0 3.32e-01 100.0% 46.2%
3469919 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.53 42.0 4.12e-01 97.1% 84.0%
5048181 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.52 46.0 3.48e-01 98.6% 92.9%
2756766 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.52 41.0 3.44e-01 90.0% 57.5%
4671394 109.4.1.939 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_C 0.52 44.0 3.14e-01 98.6% 32.5%
4223379 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.52 42.0 3.65e-01 91.4% 100.0%
3386398 601.50.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain › FliD_C 0.52 41.0 3.20e-01 85.7% 90.0%
3186724 109.2.1.13 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_76 0.52 44.0 2.80e-01 97.1% 32.9%
3356202 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 42.0 2.75e-01 90.0% 32.5%
4948237 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.52 40.0 3.27e-01 85.7% 87.9%
5077356 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.29e-01 87.1% 46.4%
5056444 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.52 45.0 2.92e-01 100.0% 26.4%
3253078 7519.1.1.1 ↗ a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.51 45.0 3.02e-01 100.0% 32.0%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.51 42.0 2.68e-01 94.3% 39.7%
3214850 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.51 39.0 2.63e-01 90.0% 46.9%
3639274 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.51 41.0 2.50e-01 90.0% 89.0%
3593808 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 36.0 3.17e-01 72.9% 82.0%
3786050 2008.2.1.2 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 0.50 40.0 3.55e-01 90.0% 78.1%