←Back to structures
MW239124.1__QQG32304.1__CkP1_0158__00158
Bact-VirMW239124.1__QQG32304.1__CkP1_0158__00158
Identity
- Accession:
- MW239124 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Karamvirus›
Citrobacter_phage_CkP1
TaxID: 2799684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-70
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vhnA02 | 1.10.1200.80 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 | 0.60 | 47.0 | 4.42e-01 | 92.7% | 87.3% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.59 | 49.0 | 3.55e-01 | 98.2% | 91.3% |
| 1o9jC01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 43.0 | 2.75e-01 | 87.3% | 68.1% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 43.0 | 3.63e-01 | 89.1% | 57.6% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 40.0 | 3.87e-01 | 89.1% | 66.2% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.55 | 45.0 | 4.31e-01 | 100.0% | 90.0% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.18e-01 | 98.2% | 83.3% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.53 | 42.0 | 2.97e-01 | 100.0% | 37.6% |
| 5i1uA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.52 | 43.0 | 2.81e-01 | 100.0% | 95.3% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962574 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.67 | 57.0 | 5.62e-01 | 96.4% | 98.3% |
| 3881145 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.64 | 47.0 | 3.90e-01 | 76.4% | 53.3% |
| 3592712 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 55.0 | 3.94e-01 | 100.0% | 74.7% |
| 4281410 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.63 | 51.0 | 4.94e-01 | 94.5% | 95.4% |
| 3407942 | 101.1.2.90 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9 | 0.57 | 48.0 | 4.26e-01 | 100.0% | 84.7% |
| 3920662 | 109.4.1.917 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N | 0.57 | 40.0 | 3.42e-01 | 76.4% | 46.3% |
| 3807923 | 568.1.1.5 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › MTCP1 | 0.54 | 38.0 | 3.83e-01 | 78.2% | 96.4% |
| 3449417 | 604.17.1.3 ↗ | alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › CMC4 | 0.53 | 38.0 | 3.81e-01 | 78.2% | 96.4% |
| 3239011 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.53 | 40.0 | 3.74e-01 | 89.1% | 73.3% |
| 3231843 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 40.0 | 3.74e-01 | 90.9% | 77.3% |
| 5080543 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 40.0 | 2.79e-01 | 92.7% | 22.7% |
| 3749795 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.52 | 36.0 | 2.40e-01 | 78.2% | 27.6% |
| 5023154 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.51 | 41.0 | 3.71e-01 | 96.4% | 77.6% |
| 3879538 | 604.12.1.74 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › POPDC1-3 | 0.50 | 35.0 | 3.31e-01 | 78.2% | 81.3% |