←Back to structures
MW239124.1__QQG32307.1__CkP1_0283__00283
Bact-VirMW239124.1__QQG32307.1__CkP1_0283__00283
Identity
- Accession:
- MW239124 ↗
- Kingdom:
- phage
Quality
82.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Karamvirus›
Citrobacter_phage_CkP1
TaxID: 2799684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rypK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.69 | 57.0 | 4.04e-01 | 95.1% | 94.4% |
| 6ziwI02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.68 | 53.0 | 3.79e-01 | 85.2% | 97.3% |
| 2xqyA03 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.65 | 54.0 | 4.16e-01 | 90.2% | 42.1% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 45.0 | 2.71e-01 | 75.4% | 38.4% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.63 | 46.0 | 3.72e-01 | 78.7% | 44.1% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.60 | 36.0 | 3.68e-01 | 100.0% | 62.1% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.59 | 42.0 | 3.54e-01 | 77.0% | 45.9% |
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.54 | 43.0 | 2.96e-01 | 95.1% | 68.6% |
| 6p1hB02 | 2.40.50.430 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 38.0 | 2.99e-01 | 75.4% | 73.2% |
| 2f9iD00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 46.0 | 3.03e-01 | 98.4% | 36.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3238197 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.69 | 50.0 | 3.52e-01 | 77.0% | 33.9% |
| 3516702 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.60 | 49.0 | 3.44e-01 | 95.1% | 79.5% |
| 3213123 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 31.0 | 3.99e-01 | 95.1% | 100.0% |
| 3720034 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 42.0 | 3.27e-01 | 77.0% | 39.3% |
| 3858552 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.54 | 45.0 | 3.20e-01 | 93.4% | 80.0% |
| 11005 | 2008.1.1.9 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRI | 0.54 | 44.0 | 3.00e-01 | 95.1% | 68.6% |