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MW248466.1__QQM14688.1__CPT_MarsHill_154__00151

Bact-Vir

MW248466.1__QQM14688.1__CPT_MarsHill_154__00151

Identity

Accession:
MW248466 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_MarsHill

TaxID: 2796499

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 373-517
PDB
Domain cluster: rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00157__D2-120
D2 medium residues 4-111
PDB
D3 medium residues 145-176_190-243
PDB
D4 medium residues 325-361_567-584
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 53.0 3.58e-01 94.5% 21.1%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 54.0 4.21e-01 100.0% 42.0%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 53.0 4.19e-01 100.0% 42.0%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 53.0 4.08e-01 100.0% 39.7%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.65 41.0 3.56e-01 78.2% 42.2%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 57.0 3.69e-01 100.0% 22.0%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.64 52.0 3.83e-01 94.5% 35.6%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 55.0 3.59e-01 100.0% 31.5%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.61 53.0 3.92e-01 100.0% 81.3%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 52.0 4.30e-01 100.0% 95.0%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 49.0 4.48e-01 94.5% 92.0%
4x30A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 52.0 3.82e-01 100.0% 57.6%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.41e-01 100.0% 69.5%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.14e-01 100.0% 56.5%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 44.0 2.94e-01 83.6% 80.1%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.58 50.0 3.39e-01 96.4% 35.9%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 51.0 3.99e-01 100.0% 58.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 51.0 4.34e-01 100.0% 93.4%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 48.0 3.53e-01 96.4% 52.2%
3t8qB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 48.0 3.82e-01 94.5% 93.9%
1crmA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.58 50.0 3.26e-01 100.0% 43.8%
5z62B02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 49.0 3.75e-01 100.0% 86.0%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 50.0 4.01e-01 100.0% 88.0%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.81e-01 90.9% 86.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 4.25e-01 98.2% 83.7%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 42.0 3.06e-01 87.3% 80.0%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 46.0 4.55e-01 100.0% 87.9%
1o97C00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 38.0 2.45e-01 94.5% 15.5%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 47.0 3.71e-01 100.0% 87.0%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 43.0 3.64e-01 100.0% 50.5%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.39e-01 90.9% 96.3%
2g7hA01 3.30.160.460 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 3.45e-01 85.5% 53.9%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.55 45.0 3.72e-01 100.0% 66.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.38e-01 81.8% 69.9%
2jvnA00 3.90.640.80 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.54 39.0 3.04e-01 78.2% 48.4%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 45.0 2.78e-01 100.0% 15.1%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 43.0 3.36e-01 90.9% 86.0%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 46.0 2.89e-01 100.0% 20.5%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.46e-01 100.0% 54.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 39.0 3.78e-01 98.2% 68.7%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 46.0 3.90e-01 100.0% 94.7%
1x5mA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.60e-01 100.0% 50.9%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 45.0 3.57e-01 96.4% 74.5%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 41.0 2.99e-01 96.4% 51.3%
1nbwA04 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.32e-01 96.4% 95.5%
3pqvA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.51 44.0 3.74e-01 100.0% 91.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4437554 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.67 56.0 4.28e-01 100.0% 40.8%
3728061 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.67 59.0 4.44e-01 100.0% 60.2%
3936915 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.66 59.0 4.45e-01 100.0% 44.6%
5979 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 54.0 4.17e-01 100.0% 40.7%
3454686 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.66 48.0 3.65e-01 78.2% 80.0%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.66 59.0 4.39e-01 100.0% 41.5%
2096126 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 53.0 4.16e-01 100.0% 41.0%
3210421 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 58.0 4.17e-01 100.0% 51.0%
3407531 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 58.0 4.32e-01 100.0% 57.8%
3387590 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.65 54.0 4.25e-01 100.0% 44.3%
4619259 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 57.0 4.23e-01 100.0% 38.6%
3346536 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 57.0 4.23e-01 100.0% 40.0%
4162061 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.65 54.0 4.22e-01 100.0% 42.3%
3256387 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 57.0 4.13e-01 100.0% 45.8%
2834340 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 57.0 4.24e-01 100.0% 61.2%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.65 57.0 4.33e-01 100.0% 61.5%
2325189 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.65 57.0 4.26e-01 100.0% 43.1%
4943405 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.64 56.0 4.30e-01 100.0% 63.2%
3230926 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.64 56.0 4.28e-01 100.0% 43.1%
4992059 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.64 55.0 4.30e-01 100.0% 54.5%
4336156 227.1.1.8 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.63 53.0 4.15e-01 100.0% 43.3%
3815957 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 55.0 3.45e-01 100.0% 99.7%
4024730 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 55.0 4.82e-01 100.0% 69.4%
3719304 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.63 54.0 4.14e-01 100.0% 44.0%
2392831 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.62 55.0 4.21e-01 100.0% 52.0%
3211283 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.62 51.0 3.65e-01 96.4% 51.4%
4373440 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.61 54.0 4.54e-01 100.0% 87.4%
3936914 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.61 53.0 4.05e-01 100.0% 43.1%
3787700 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.61 52.0 3.84e-01 100.0% 55.5%
4065841 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.60 53.0 4.43e-01 100.0% 80.0%
4297175 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.60 52.0 4.47e-01 100.0% 78.9%
3854990 2003.1.2.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase, Pyr_redox_2, NAD_binding_8 0.59 46.0 2.69e-01 85.5% 47.7%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.59 51.0 3.80e-01 100.0% 44.1%
4426619 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 52.0 4.33e-01 100.0% 85.3%
4768829 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.58 51.0 3.16e-01 100.0% 17.9%
4948723 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 44.0 4.64e-01 98.2% 93.8%
4413603 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 50.0 4.19e-01 100.0% 83.0%
3286934 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 3.38e-01 96.4% 50.3%
4880118 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 43.0 4.00e-01 98.2% 64.3%
4200272 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 50.0 4.27e-01 100.0% 74.4%
3415928 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.56 41.0 4.07e-01 96.4% 73.3%
3250994 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.57e-01 100.0% 89.2%
3266673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.03e-01 100.0% 88.5%
3398310 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.70e-01 94.5% 47.8%
4977730 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.55 44.0 4.44e-01 98.2% 90.9%
4304579 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 45.0 4.34e-01 100.0% 78.5%
4984962 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 48.0 3.01e-01 100.0% 35.1%
2557488 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.54 48.0 3.59e-01 100.0% 69.6%
4129953 325.1.7.3 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.54 45.0 4.25e-01 100.0% 78.5%
4983389 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 40.0 3.87e-01 98.2% 69.2%
5054141 2.14.1.0 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.53 40.0 4.12e-01 96.4% 96.0%
4606688 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 41.0 3.80e-01 98.2% 65.3%
3964664 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 39.0 3.63e-01 98.2% 64.7%
1385077 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 41.0 3.05e-01 96.4% 55.5%
4068978 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 41.0 3.74e-01 100.0% 66.7%
3243870 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.50 44.0 3.52e-01 100.0% 51.8%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 40.0 3.84e-01 100.0% 76.9%
D5 medium residues 526-566_585-615
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 36.0 3.63e-01 79.2% 52.1%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.64 55.0 4.84e-01 97.2% 65.1%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 34.0 3.63e-01 79.2% 60.3%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.57 50.0 4.05e-01 100.0% 71.9%
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 41.0 3.33e-01 79.2% 55.0%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.25e-01 83.3% 89.4%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 43.0 3.62e-01 90.3% 81.0%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 46.0 3.70e-01 100.0% 94.2%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 35.0 2.78e-01 84.7% 31.2%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 36.0 3.33e-01 98.6% 52.1%
3wx1A00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.53 43.0 3.79e-01 90.3% 83.3%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.90e-01 95.8% 84.4%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.57e-01 100.0% 17.8%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 36.0 2.36e-01 73.6% 24.0%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.70e-01 93.1% 88.9%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.50 29.0 3.39e-01 75.0% 90.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049605 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 38.0 4.21e-01 75.0% 72.7%
5019862 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 44.0 4.38e-01 100.0% 69.3%
3610331 330.13.1.0 ↗ a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor 0.61 38.0 3.82e-01 77.8% 60.0%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 38.0 4.11e-01 87.5% 76.7%
4545039 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 4.36e-01 100.0% 80.0%
3592743 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 39.0 3.85e-01 97.2% 62.5%
3983036 2484.1.1.119 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.58 34.0 3.61e-01 73.6% 64.6%
3983782 2484.1.1.119 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.58 34.0 3.19e-01 73.6% 44.7%
3165222 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 33.0 3.18e-01 75.0% 48.2%
3669262 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.56 42.0 2.68e-01 81.9% 21.0%
5049449 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 37.0 4.12e-01 84.7% 100.0%
3773104 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.49e-01 98.6% 44.4%
3647546 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 38.0 4.25e-01 79.2% 94.5%
4959030 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.06e-01 98.6% 96.7%
3694138 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.55 44.0 3.71e-01 90.3% 82.8%
3926920 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.54 43.0 3.78e-01 90.3% 79.1%
3505668 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.54 44.0 3.79e-01 90.3% 77.4%
4052313 2484.1.1.10 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.54 31.0 2.80e-01 81.9% 38.1%
3777737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.49e-01 98.6% 51.3%
4342311 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.53 43.0 3.15e-01 88.9% 61.0%
3231587 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.95e-01 87.5% 76.7%
3633141 708.1.2.11 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.52 39.0 3.57e-01 80.6% 82.5%
3212093 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.52 42.0 3.70e-01 90.3% 71.8%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.52 42.0 3.58e-01 88.9% 91.7%
3740897 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.52 35.0 2.36e-01 100.0% 15.8%
3836977 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.51 41.0 3.66e-01 90.3% 71.8%
3440532 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.51 41.0 3.68e-01 90.3% 75.2%
3214909 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.51 41.0 3.63e-01 90.3% 78.2%
3959120 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 32.0 3.14e-01 84.7% 54.1%
3778489 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.51 41.0 3.51e-01 90.3% 67.5%
3787284 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.50 40.0 3.62e-01 90.3% 76.2%
D6 medium residues 616-760
PDB
Domain cluster: rep: MW478290.1__QTZ82849.1__phiCPB_00018__00018__D550-576_640-767
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ty1A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.70 66.0 4.72e-01 100.0% 44.5%
3q1nA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 61.0 4.74e-01 93.8% 58.2%
3mwxA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.67 60.0 4.55e-01 95.2% 51.6%
1x1iA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 56.0 4.53e-01 100.0% 49.5%
2htaA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 58.0 4.51e-01 97.2% 49.5%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.63 57.0 4.68e-01 100.0% 63.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 31.0 3.71e-01 95.9% 71.6%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 30.0 3.27e-01 92.4% 59.2%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.56 35.0 3.69e-01 97.2% 67.4%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.56 51.0 3.88e-01 97.2% 47.5%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.54 47.0 3.68e-01 94.5% 45.7%
1x1iA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 26.0 2.86e-01 93.1% 52.5%
4aqzA00 2.60.40.3470 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.55e-01 72.4% 69.6%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.50 26.0 2.96e-01 85.5% 64.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4258822 12.3.1.61 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25837 0.73 61.0 5.21e-01 95.2% 57.3%
4955165 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.73 64.0 5.12e-01 100.0% 49.8%
4979776 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.71 59.0 4.77e-01 100.0% 46.5%
5046362 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.71 58.0 4.71e-01 97.9% 46.3%
3260205 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.68 61.0 4.61e-01 95.2% 52.5%
5037697 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.68 62.0 5.29e-01 100.0% 62.6%
3421470 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.67 59.0 4.46e-01 94.5% 56.4%
4958029 12.3.1.75 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GDE_N_bis 0.66 48.0 4.14e-01 97.2% 49.1%
4392904 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.66 61.0 4.85e-01 99.3% 53.9%
4216993 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.66 61.0 4.88e-01 100.0% 56.0%
4197086 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.65 60.0 4.68e-01 100.0% 51.5%
4048735 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.65 60.0 4.59e-01 100.0% 54.5%
2089784 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.64 52.0 4.39e-01 100.0% 52.8%
3969359 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.64 58.0 4.53e-01 97.2% 51.5%
3186199 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.63 57.0 4.56e-01 100.0% 54.6%
3283279 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.59 31.0 3.28e-01 100.0% 55.4%
3263214 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 52.0 4.46e-01 97.2% 61.3%
4013432 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 53.0 4.26e-01 100.0% 54.9%
3690350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 30.0 3.25e-01 80.7% 70.0%