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MW258709.1__QVV96852.1__X__00014

Bact-Vir

MW258709.1__QVV96852.1__X__00014

Identity

Accession:
MW258709 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Kayfunavirus› Kosakonia_phage_Kc166A

TaxID: 2801381

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-82
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.61 52.0 3.60e-01 100.0% 28.0%
6lbrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.07e-01 74.7% 74.1%
2oaaB01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.56 39.0 3.48e-01 70.9% 73.1%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 43.0 3.93e-01 96.2% 60.7%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 46.0 3.93e-01 91.1% 97.0%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.55 44.0 3.80e-01 88.6% 91.6%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 47.0 4.00e-01 94.9% 68.4%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.71e-01 88.6% 59.1%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 41.0 2.98e-01 88.6% 27.4%
1cl8A00 3.40.580.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A 0.54 48.0 3.37e-01 100.0% 67.4%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 47.0 4.05e-01 100.0% 63.6%
4ydzA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 34.0 2.87e-01 72.2% 36.3%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 37.0 3.54e-01 72.2% 76.8%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.54 45.0 3.28e-01 93.7% 80.5%
4zboC00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.53 44.0 3.17e-01 94.9% 80.6%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 47.0 4.08e-01 98.7% 70.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 42.0 2.99e-01 87.3% 52.7%
1huxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 35.0 3.13e-01 86.1% 47.1%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 38.0 2.81e-01 75.9% 68.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.38e-01 88.6% 53.9%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.51 29.0 3.45e-01 75.9% 100.0%
4ua3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.21e-01 89.9% 62.9%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 35.0 3.02e-01 73.4% 67.1%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 3.24e-01 96.2% 72.4%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.51 37.0 2.37e-01 78.5% 26.5%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 41.0 2.98e-01 94.9% 68.3%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 38.0 3.23e-01 82.3% 48.6%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 2.75e-01 82.3% 66.4%
1rxtC02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 40.0 3.05e-01 87.3% 57.0%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 32.0 2.48e-01 77.2% 29.2%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.47e-01 100.0% 68.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944609 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.64 44.0 3.38e-01 70.9% 58.9%
3496968 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 3.62e-01 70.9% 70.4%
3665234 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.61 43.0 3.70e-01 74.7% 89.2%
3800723 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.61 43.0 2.99e-01 73.4% 31.7%
3779981 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 43.0 2.76e-01 88.6% 14.7%
3531250 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.59 44.0 2.76e-01 88.6% 14.6%
3415067 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.59 43.0 3.15e-01 77.2% 65.3%
4050578 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.59 42.0 3.62e-01 87.3% 47.2%
5048918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.80e-01 88.6% 50.0%
3510509 11.12.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD 0.56 47.0 3.76e-01 91.1% 84.5%
3397523 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 47.0 4.01e-01 94.9% 84.4%
3273076 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.56 47.0 3.82e-01 93.7% 69.7%
3599435 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.56 44.0 2.78e-01 84.8% 29.7%
3869259 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.55 48.0 3.85e-01 94.9% 70.3%
169039 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.55 44.0 3.80e-01 88.6% 91.6%
3507631 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.55 46.0 3.64e-01 93.7% 77.1%
3936956 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 40.0 3.57e-01 75.9% 90.9%
4002839 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.55 44.0 3.27e-01 88.6% 66.5%
4292124 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.55 45.0 3.43e-01 91.1% 72.1%
4484979 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 38.0 3.09e-01 87.3% 35.7%
4543638 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 39.0 3.17e-01 88.6% 37.0%
3683044 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 45.0 3.42e-01 93.7% 59.0%
3940409 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 45.0 2.86e-01 97.5% 91.5%
4029721 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 41.0 3.91e-01 82.3% 90.5%
4030708 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 42.0 2.47e-01 86.1% 21.3%
3494392 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.53 37.0 2.39e-01 100.0% 15.7%
3413200 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 39.0 2.53e-01 88.6% 14.8%
4408649 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.52 41.0 3.00e-01 86.1% 39.6%
3919374 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 45.0 3.95e-01 100.0% 86.4%
5077488 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.48e-01 100.0% 89.4%
3937774 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.35e-01 88.6% 51.2%
3826594 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 42.0 2.89e-01 92.4% 37.2%
3639154 331.4.1.27 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › VASt 0.50 41.0 3.15e-01 94.9% 55.1%