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MW269554.1__QPZ53291.1__AchV4_0058__00058

Bact-Vir

MW269554.1__QPZ53291.1__AchV4_0058__00058

Identity

Accession:
MW269554 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Gediminasvirus› Achromobacter_phage_vB_AchrS_AchV4

TaxID: 2796514

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-103
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rp5A01 2.20.70.70 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 39.0 4.68e-01 76.8% 100.0%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 42.0 3.46e-01 75.0% 77.8%
6uf3A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.57 47.0 3.13e-01 96.4% 76.0%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 44.0 3.20e-01 89.3% 62.2%
6p0cA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.55 46.0 3.65e-01 98.2% 69.8%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 47.0 3.69e-01 98.2% 70.0%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 46.0 3.74e-01 100.0% 71.7%
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 47.0 3.32e-01 100.0% 79.4%
2cfmA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 46.0 3.20e-01 100.0% 82.1%
2hivA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 45.0 3.15e-01 100.0% 81.1%
1vs0A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 45.0 3.66e-01 98.2% 67.3%
3vnnA00 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 45.0 3.54e-01 100.0% 91.1%
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.52 45.0 3.72e-01 98.2% 72.5%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.18e-01 96.4% 53.4%
4aycA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 34.0 3.04e-01 71.4% 97.6%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706757 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 41.0 2.94e-01 80.4% 45.9%
5036153 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.57 50.0 3.45e-01 100.0% 83.1%
3919870 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.57 39.0 3.04e-01 73.2% 66.7%
3981710 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.57 44.0 2.90e-01 85.7% 30.6%
4047933 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.56 49.0 3.39e-01 100.0% 80.0%
3962528 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.56 49.0 3.39e-01 100.0% 79.5%
4325132 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.56 48.0 3.03e-01 100.0% 52.4%
4098851 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.56 48.0 2.99e-01 100.0% 48.7%
3572729 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.55 37.0 3.70e-01 71.4% 88.3%
4002195 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.55 37.0 3.71e-01 71.4% 93.3%
3799247 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 47.0 3.08e-01 100.0% 62.7%
3795817 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.54 47.0 3.07e-01 100.0% 61.5%
3222500 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.54 36.0 3.35e-01 71.4% 70.0%
3918730 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.54 36.0 3.78e-01 71.4% 95.8%
4937749 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.54 47.0 2.93e-01 100.0% 50.3%
3378267 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.54 47.0 2.79e-01 100.0% 41.1%
3602296 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.54 46.0 3.15e-01 100.0% 80.9%
2543709 2003.1.2.60 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 0.54 37.0 2.50e-01 92.9% 18.7%
4945406 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.53 45.0 3.14e-01 100.0% 79.5%
4237088 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.53 46.0 3.18e-01 100.0% 77.0%
4213407 4095.1.1.2 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_M+DNA_ligase_A_N 0.53 45.0 2.75e-01 100.0% 40.0%
3502605 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.52 35.0 3.56e-01 71.4% 94.5%
4966636 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 45.0 3.10e-01 100.0% 79.5%
4977191 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 45.0 3.06e-01 100.0% 76.7%
4667555 5.1.3.162 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, SGL 0.52 46.0 2.83e-01 100.0% 85.9%
5036089 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.51 45.0 3.47e-01 98.2% 62.4%
4953660 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.51 44.0 3.43e-01 96.4% 72.5%
3744781 109.4.1.69 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IKI3 0.51 39.0 2.51e-01 92.9% 16.3%
3544622 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.51 34.0 3.34e-01 71.4% 89.2%