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MW269554.1__QPZ53312.1__AchV4_0040__00040
Bact-VirMW269554.1__QPZ53312.1__AchV4_0040__00040
Identity
- Accession:
- MW269554 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casjensviridae›
Gediminasvirus›
Achromobacter_phage_vB_AchrS_AchV4
TaxID: 2796514
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v64A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.74 | 58.0 | 4.82e-01 | 100.0% | 48.1% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.70 | 55.0 | 5.87e-01 | 96.7% | 98.1% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.69 | 36.0 | 3.75e-01 | 100.0% | 53.4% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.68 | 55.0 | 5.56e-01 | 95.1% | 90.2% |
| 2crjA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.64 | 52.0 | 4.64e-01 | 96.7% | 62.0% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.63 | 51.0 | 4.77e-01 | 96.7% | 72.2% |
| 4ertA01 | 1.10.490.160 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.59 | 50.0 | 3.81e-01 | 100.0% | 83.4% |
| 3d0wA00 | 1.10.760.20 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243 | 0.57 | 40.0 | 3.56e-01 | 100.0% | 52.3% |
| 4uavA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 3.60e-01 | 77.0% | 52.9% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.56 | 45.0 | 3.21e-01 | 88.5% | 28.3% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.56 | 48.0 | 4.50e-01 | 98.4% | 94.7% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 48.0 | 4.11e-01 | 98.4% | 87.0% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 39.0 | 4.10e-01 | 100.0% | 81.8% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.55 | 38.0 | 2.40e-01 | 72.1% | 24.7% |
| 2g7rA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 49.0 | 4.38e-01 | 100.0% | 72.1% |
| 5fcxA00 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.55 | 46.0 | 3.50e-01 | 91.8% | 96.4% |
| 3al2A01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.55 | 44.0 | 3.51e-01 | 88.5% | 43.9% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 40.0 | 2.91e-01 | 77.0% | 44.0% |
| 3ndaA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.54 | 43.0 | 2.92e-01 | 90.2% | 27.3% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.52 | 43.0 | 3.91e-01 | 96.7% | 88.4% |
| 2dbhA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 43.0 | 4.02e-01 | 96.7% | 88.6% |
| 3mg2B01 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.51 | 48.0 | 3.53e-01 | 100.0% | 57.1% |
| 1xg7B01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.51 | 33.0 | 3.01e-01 | 82.0% | 42.7% |
| 3u9rB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 42.0 | 2.86e-01 | 98.4% | 98.9% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 39.0 | 3.49e-01 | 88.5% | 70.5% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.50 | 32.0 | 3.44e-01 | 75.4% | 78.0% |
| 2oebA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.50 | 45.0 | 3.36e-01 | 100.0% | 64.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3471666 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 61.0 | 5.72e-01 | 96.7% | 76.0% |
| 3605979 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.72 | 60.0 | 5.96e-01 | 100.0% | 87.7% |
| 3519620 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.70 | 57.0 | 4.69e-01 | 96.7% | 50.0% |
| 3223068 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.69 | 56.0 | 5.71e-01 | 95.1% | 91.7% |
| 3781276 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.69 | 57.0 | 5.62e-01 | 100.0% | 87.7% |
| 4027821 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.68 | 59.0 | 5.81e-01 | 96.7% | 90.8% |
| 3741238 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.68 | 55.0 | 5.35e-01 | 100.0% | 80.0% |
| 3575172 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.68 | 54.0 | 5.20e-01 | 93.4% | 76.8% |
| 3391114 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.67 | 54.0 | 5.31e-01 | 98.4% | 81.5% |
| 4995684 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.67 | 58.0 | 5.86e-01 | 100.0% | 96.7% |
| 3720888 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.67 | 53.0 | 5.01e-01 | 96.7% | 73.3% |
| 3998355 | 190.1.1.25 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › PF29135 | 0.66 | 58.0 | 5.58e-01 | 100.0% | 97.1% |
| 3893243 | 190.1.1.9 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 | 0.66 | 53.0 | 5.50e-01 | 93.4% | 96.4% |
| 4591229 | 190.1.1.8 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT | 0.66 | 55.0 | 4.86e-01 | 100.0% | 62.1% |
| 4354455 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.65 | 51.0 | 4.96e-01 | 100.0% | 75.7% |
| 3711589 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.65 | 54.0 | 5.06e-01 | 96.7% | 76.0% |
| 3712226 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.64 | 47.0 | 4.09e-01 | 78.7% | 51.6% |
| 4079824 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.64 | 52.0 | 5.13e-01 | 98.4% | 87.7% |
| 4453675 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.63 | 51.0 | 5.04e-01 | 96.7% | 86.2% |
| 4030562 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.62 | 51.0 | 4.84e-01 | 91.8% | 76.0% |
| 3379763 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.62 | 51.0 | 4.73e-01 | 96.7% | 72.5% |
| 3757366 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.61 | 51.0 | 4.71e-01 | 96.7% | 72.5% |
| 3398929 | 5041.1.1.32 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 | 0.61 | 43.0 | 3.84e-01 | 78.7% | 51.1% |
| 3738741 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.60 | 52.0 | 4.76e-01 | 96.7% | 83.7% |
| 3715040 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.59 | 50.0 | 3.21e-01 | 100.0% | 18.8% |
| 4941322 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 47.0 | 3.04e-01 | 91.8% | 35.4% |
| 3520607 | 109.27.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BACK | 0.55 | 41.0 | 3.61e-01 | 82.0% | 92.6% |
| 4975796 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.55 | 47.0 | 4.12e-01 | 98.4% | 100.0% |
| 4877200 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.55 | 41.0 | 3.49e-01 | 83.6% | 66.1% |
| 3700785 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 36.0 | 3.55e-01 | 70.5% | 63.1% |
| 2069264 | 565.1.1.1 ↗ | alpha arrays › Orange carotenoid protein, N-terminal domain › Orange carotenoid protein, N-terminal domain › Orange carotenoid protein, N-terminal domain › Carot_N | 0.55 | 46.0 | 3.50e-01 | 91.8% | 96.4% |
| 3237222 | 101.1.4.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CUT | 0.55 | 45.0 | 3.65e-01 | 86.9% | 51.4% |
| 3613552 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 47.0 | 3.34e-01 | 96.7% | 33.3% |
| 3593203 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 36.0 | 3.16e-01 | 73.8% | 49.0% |
| 4927051 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.50e-01 | 83.6% | 62.9% |
| 4296289 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.53 | 41.0 | 2.99e-01 | 91.8% | 66.8% |
| 3746945 | 5051.1.1.1 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF | 0.53 | 38.0 | 2.23e-01 | 80.3% | 60.5% |
| 4341780 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.52 | 34.0 | 3.34e-01 | 80.3% | 61.5% |
| 3959922 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 46.0 | 3.83e-01 | 100.0% | 80.0% |
| 3584852 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.52 | 40.0 | 3.13e-01 | 91.8% | 48.1% |