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MW269554.1__QPZ53315.1__AchV4_0065__00065

Bact-Vir

MW269554.1__QPZ53315.1__AchV4_0065__00065

Identity

Accession:
MW269554 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Gediminasvirus› Achromobacter_phage_vB_AchrS_AchV4

TaxID: 2796514

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-60
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.69 52.0 3.43e-01 84.6% 74.2%
4tweA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.66 50.0 3.35e-01 86.5% 97.8%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 56.0 4.50e-01 100.0% 68.5%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.65 46.0 3.56e-01 75.0% 90.2%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 52.0 3.50e-01 100.0% 50.2%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 54.0 4.93e-01 100.0% 70.8%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 53.0 3.93e-01 100.0% 47.4%
3fedA02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.64 49.0 3.28e-01 86.5% 97.7%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 43.0 3.20e-01 73.1% 27.9%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 51.0 3.45e-01 100.0% 51.7%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 44.0 3.30e-01 76.9% 82.6%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 53.0 4.13e-01 100.0% 76.2%
2mm0A00 2.10.70.110 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.62 49.0 4.59e-01 88.5% 96.9%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 43.0 3.31e-01 75.0% 87.9%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.62 51.0 3.96e-01 100.0% 41.4%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 43.0 3.17e-01 75.0% 65.8%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 52.0 4.33e-01 100.0% 68.8%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 43.0 3.44e-01 75.0% 75.2%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 52.0 3.91e-01 100.0% 82.2%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 41.0 3.20e-01 75.0% 84.2%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 42.0 3.19e-01 78.8% 54.1%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.58 49.0 4.04e-01 100.0% 53.5%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 49.0 3.69e-01 100.0% 56.2%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 45.0 3.97e-01 94.2% 61.6%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 45.0 3.10e-01 100.0% 52.1%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 3.92e-01 100.0% 65.7%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 4.04e-01 88.5% 71.0%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.03e-01 100.0% 55.9%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 47.0 3.57e-01 98.1% 54.4%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 3.54e-01 98.1% 43.4%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.97e-01 100.0% 62.0%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 40.0 3.16e-01 75.0% 36.0%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 46.0 3.50e-01 100.0% 39.7%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 48.0 3.93e-01 100.0% 52.9%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.54e-01 90.4% 45.1%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 38.0 3.13e-01 75.0% 35.8%
3jxvA02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 44.0 3.38e-01 88.5% 66.1%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.55 42.0 3.68e-01 92.3% 52.9%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.41e-01 100.0% 59.4%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.86e-01 100.0% 60.2%
1zczA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.54 42.0 3.50e-01 100.0% 67.5%
1sfpA00 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.53 44.0 3.55e-01 100.0% 45.0%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.53 43.0 2.97e-01 100.0% 36.4%
1z5yE00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.06e-01 84.6% 43.4%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 41.0 3.99e-01 100.0% 77.0%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.73e-01 100.0% 61.6%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.62e-01 100.0% 51.5%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.50e-01 100.0% 46.2%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 41.0 3.43e-01 92.3% 83.0%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.52 45.0 3.54e-01 100.0% 60.7%
1y8qD03 3.10.290.20 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 0.52 45.0 3.62e-01 100.0% 50.5%
1z9mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.51e-01 100.0% 60.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.77 67.0 6.43e-01 100.0% 93.3%
3789849 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 60.0 5.78e-01 100.0% 88.3%
3584645 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 59.0 4.64e-01 100.0% 63.5%
3970378 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 47.0 3.34e-01 76.9% 30.6%
4946541 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.66 45.0 3.95e-01 84.6% 47.5%
4275741 304.110.1.4 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N 0.64 51.0 4.29e-01 88.5% 80.0%
3738773 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.64 51.0 5.08e-01 100.0% 87.3%
3964245 3438.1.1.2 ↗ alpha arrays › Unknown function protein VPA0580 › Unknown function protein VPA0580 › Unknown function protein VPA0580 › DUF2322 0.63 50.0 3.99e-01 88.5% 84.8%
3978824 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.62 47.0 3.42e-01 88.5% 33.5%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 44.0 3.31e-01 75.0% 75.4%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 43.0 3.56e-01 75.0% 90.0%
3395675 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.62 44.0 3.22e-01 76.9% 77.4%
3982526 223.1.1.61 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SMP_2 0.61 46.0 3.65e-01 86.5% 46.4%
4010783 223.8.1.2 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.61 47.0 3.85e-01 88.5% 51.8%
4966253 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 53.0 4.35e-01 100.0% 62.1%
4947581 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.40e-01 75.0% 83.6%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.60 43.0 3.29e-01 76.9% 74.6%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.27e-01 76.9% 78.5%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 3.20e-01 71.2% 77.4%
3270933 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.60 41.0 3.16e-01 73.1% 83.2%
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.60 48.0 3.46e-01 90.4% 35.6%
4010374 223.1.1.156 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.60 47.0 3.69e-01 90.4% 47.5%
5049764 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 41.0 3.21e-01 71.2% 82.6%
3768152 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.92e-01 100.0% 91.7%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.60 46.0 3.36e-01 88.5% 38.1%
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.60 43.0 3.21e-01 76.9% 76.3%
3313678 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 43.0 3.16e-01 78.8% 29.3%
3927766 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.59 41.0 3.05e-01 75.0% 68.3%
3206651 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.57 41.0 3.03e-01 76.9% 67.6%
4267139 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.38e-01 100.0% 86.0%
3479775 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 44.0 3.68e-01 88.5% 48.4%
5018703 815.1.1.0 ↗ a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.55 46.0 3.96e-01 100.0% 64.4%
5747 4007.1.1.1 ↗ a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.54 43.0 4.25e-01 90.4% 85.2%
5048945 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 2.98e-01 76.9% 79.2%
3277566 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 3.80e-01 90.4% 94.7%
4998579 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 2.94e-01 88.5% 47.2%
4029586 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 41.0 3.11e-01 90.4% 73.3%
3218185 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 2.93e-01 96.2% 57.2%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.52 41.0 4.15e-01 88.5% 96.0%
4113500 1056.1.1.1 ↗ a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.51 41.0 2.86e-01 100.0% 42.8%