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MW273920.1__QPZ53364.1__HTVC024P_gp44__00044

Bact-Vir

MW273920.1__QPZ53364.1__HTVC024P_gp44__00044

Identity

Accession:
MW273920 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC024P

TaxID: 2796518

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-124
PDB
Domain cluster: rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
D2 high residues 146-221
PDB
Domain cluster: rep: MT647606.1__QOI69027.1__Mosig_00063__00063__D120-175
D3 high residues 512-591
PDB
Domain cluster: rep: MW057854.1__QPB11960.1__X__00051__D43-104
D4 high residues 619-691
PDB
Domain cluster: rep: OQ414635.1__WDQ27573.1__EXVC032PBaldr_052__00052__D127-189
D5 medium residues 293-359
PDB
Domain cluster: rep: HQ332140.1__AGG54641.1__PRQG_00038__00034__D568-616
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 31.0 3.35e-01 74.6% 49.1%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 4.02e-01 74.6% 82.6%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 52.0 4.34e-01 92.5% 80.7%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.62 43.0 4.60e-01 83.6% 87.3%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.59 49.0 3.38e-01 92.5% 65.6%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.59 40.0 4.47e-01 73.1% 94.1%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 29.0 3.33e-01 70.1% 63.8%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 45.0 2.92e-01 88.1% 77.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 39.0 3.51e-01 77.6% 65.7%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 46.0 3.20e-01 100.0% 49.8%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 42.0 2.85e-01 88.1% 51.4%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 42.0 3.50e-01 89.6% 98.5%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 45.0 3.60e-01 97.0% 87.8%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.54 33.0 3.89e-01 73.1% 91.3%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 44.0 3.54e-01 100.0% 55.6%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.87e-01 98.5% 63.8%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 41.0 2.80e-01 92.5% 76.1%
2ynoA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.86e-01 100.0% 65.7%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.51 36.0 2.79e-01 77.6% 56.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528795 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.70 46.0 5.31e-01 83.6% 100.0%
3516794 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.65 53.0 4.15e-01 88.1% 52.1%
1505155 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.63 43.0 4.63e-01 83.6% 85.7%
2495545 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.62 50.0 2.94e-01 85.1% 16.5%
4578847 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.61 44.0 2.85e-01 79.1% 29.1%
3404254 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.61 50.0 3.90e-01 92.5% 60.0%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.60 48.0 3.25e-01 89.6% 32.1%
2439577 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.59 47.0 3.92e-01 88.1% 68.1%
1107990 3761.1.1.1 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.59 40.0 4.50e-01 73.1% 96.0%
3474295 2004.5.1.3 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN 0.58 49.0 3.37e-01 94.0% 31.7%
2883161 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.58 40.0 3.13e-01 73.1% 44.0%
3719891 2.1.1.28 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.58 27.0 2.31e-01 86.6% 22.6%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.57 44.0 3.65e-01 86.6% 94.4%
4980041 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 28.0 3.27e-01 73.1% 64.4%
3425089 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 45.0 3.05e-01 92.5% 60.0%
3988985 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.55 40.0 3.56e-01 77.6% 83.0%
4629808 7515.1.1.2 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.54 42.0 2.56e-01 89.6% 92.5%
3729698 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 43.0 3.46e-01 95.5% 83.3%
None — 0.52 43.0 2.83e-01 100.0% 49.3%
5038043 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.51 39.0 3.06e-01 85.1% 80.0%
4031529 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.50 42.0 3.42e-01 91.0% 94.4%
3323488 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 42.0 2.85e-01 100.0% 56.3%
4235146 129.1.1.2 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 3HCDH 0.50 43.0 3.39e-01 97.0% 86.9%