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MW273921.1__QPZ53396.1__HTVC028P_gp14__00014

Bact-Vir

MW273921.1__QPZ53396.1__HTVC028P_gp14__00014

Identity

Accession:
MW273921 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC028P

TaxID: 2796519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-90
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 48.0 4.12e-01 76.5% 82.9%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 50.0 3.96e-01 91.4% 72.9%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 4.22e-01 76.5% 100.0%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.58 43.0 4.26e-01 77.8% 98.8%
1jofA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 50.0 3.24e-01 96.3% 44.4%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.56 38.0 3.04e-01 71.6% 73.5%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 48.0 3.19e-01 95.1% 50.2%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 46.0 4.04e-01 92.6% 99.2%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.07e-01 97.5% 24.1%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 47.0 3.09e-01 95.1% 44.6%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 44.0 4.32e-01 92.6% 83.3%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.98e-01 95.1% 43.2%
2ojhA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 45.0 3.10e-01 92.6% 40.4%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.16e-01 97.5% 38.7%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 40.0 2.48e-01 79.0% 26.8%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.14e-01 97.5% 38.1%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.74e-01 85.2% 31.5%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 42.0 4.17e-01 87.7% 86.7%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.52 44.0 3.38e-01 96.3% 69.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 3.07e-01 95.1% 34.9%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.72e-01 91.4% 38.9%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 41.0 3.95e-01 87.7% 78.4%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.03e-01 95.1% 49.5%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.52 40.0 2.79e-01 84.0% 28.3%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 40.0 2.84e-01 87.7% 59.6%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.86e-01 96.3% 29.7%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.70e-01 85.2% 25.3%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.50 44.0 2.83e-01 95.1% 28.8%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.50 42.0 3.22e-01 93.8% 80.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3739664 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.69 39.0 4.18e-01 91.4% 64.3%
3999896 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 46.0 5.23e-01 76.5% 100.0%
3163931 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.67 54.0 4.42e-01 88.9% 72.9%
3839277 241.16.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD 0.62 43.0 3.58e-01 72.8% 81.4%
5014721 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 37.0 3.59e-01 88.9% 52.6%
5014513 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 3.56e-01 74.1% 81.4%
3710489 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.60 41.0 3.77e-01 90.1% 55.2%
3490378 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.58 38.0 3.89e-01 96.3% 68.8%
3509852 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 48.0 3.21e-01 91.4% 51.8%
3637203 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.56 48.0 3.00e-01 95.1% 27.1%
4979605 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 49.0 3.61e-01 98.8% 84.5%
4239781 3006.1.1.6 ↗ a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C 0.56 34.0 3.63e-01 95.1% 70.0%
3239375 5.1.4.337 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_CDC20-Fz 0.55 47.0 3.02e-01 92.6% 38.4%
3259273 5.1.5.212 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_RIG_1st, Beta-prop_RIG_2nd 0.55 48.0 2.73e-01 95.1% 19.5%
3619540 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.01e-01 96.3% 29.2%
3666976 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 46.0 2.90e-01 91.4% 29.9%
4940356 219.1.1.97 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.55 44.0 3.47e-01 92.6% 63.7%
3888295 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 46.0 3.04e-01 92.6% 37.4%
3403609 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.55 43.0 4.44e-01 85.2% 93.7%
3240635 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 48.0 2.82e-01 95.1% 20.8%
3580705 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 3.12e-01 97.5% 33.9%
3584917 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.54 47.0 3.17e-01 95.1% 51.2%
3600254 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 42.0 3.31e-01 86.4% 83.8%
3314917 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.67e-01 95.1% 23.6%
3640147 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 2.81e-01 95.1% 29.9%
5009180 5.1.3.127 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Tricorn_N 0.53 45.0 3.09e-01 93.8% 28.6%
3903857 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 46.0 2.86e-01 93.8% 26.4%
3264222 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.53 41.0 2.90e-01 82.7% 46.0%
3227356 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.53 41.0 3.11e-01 86.4% 76.7%
5035278 5.1.5.235 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta_propel 0.53 45.0 3.28e-01 92.6% 46.5%
3841986 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 3.03e-01 92.6% 32.1%
4598563 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.53 38.0 2.39e-01 77.8% 33.5%
3781917 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.53 45.0 3.03e-01 95.1% 36.1%
3405033 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 46.0 2.96e-01 96.3% 27.0%
None — 0.52 45.0 2.88e-01 93.8% 44.3%
3614189 5.1.4.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Coatomer_WDAD 0.52 45.0 3.12e-01 95.1% 37.4%
None — 0.52 45.0 2.86e-01 95.1% 40.3%
3265670 5.1.4.56 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.52 45.0 2.93e-01 96.3% 47.3%
None — 0.52 46.0 2.93e-01 98.8% 39.1%
3614657 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 46.0 2.80e-01 97.5% 21.8%
3540949 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.08e-01 96.3% 30.3%
2391944 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 42.0 4.14e-01 98.8% 84.1%
4028913 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.83e-01 95.1% 35.5%
3273166 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.86e-01 91.4% 25.4%
3741318 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.77e-01 95.1% 29.3%
3178555 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.40e-01 90.1% 20.8%
3225703 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 35.0 3.89e-01 72.8% 96.7%
3595410 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 40.0 2.64e-01 90.1% 52.6%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.50 39.0 4.15e-01 82.7% 100.0%
3580035 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 2.82e-01 95.1% 29.4%
2507075 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.50 41.0 4.05e-01 98.8% 88.2%