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MW273921.1__QPZ53416.1__HTVC028P_gp34__00034

Bact-Vir

MW273921.1__QPZ53416.1__HTVC028P_gp34__00034

Identity

Accession:
MW273921 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pelagibacter_phage_HTVC028P

TaxID: 2796519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 317-384
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.65 56.0 5.00e-01 98.5% 83.7%
4ociA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 53.0 5.25e-01 94.1% 100.0%
5v89A02 1.10.238.200 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Cullin, PONY binding domain 0.64 54.0 4.81e-01 97.1% 72.5%
1b4cA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 51.0 4.66e-01 91.2% 85.9%
4i5lB01 1.10.238.230 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.62 54.0 4.78e-01 98.5% 73.0%
7eebI01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 50.0 3.84e-01 97.1% 45.0%
2k7bA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 4.76e-01 92.6% 94.7%
1cpoA00 1.10.489.10 Mainly Alpha › Orthogonal Bundle › Chloroperoxidase › Chloroperoxidase-like 0.60 49.0 3.26e-01 94.1% 72.5%
3buxB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 50.0 4.66e-01 97.1% 77.5%
1wdcC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 49.0 4.70e-01 94.1% 94.9%
3uo9C01 1.10.238.210 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.59 46.0 4.46e-01 88.2% 83.1%
4mn0A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 47.0 3.51e-01 94.1% 77.3%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.56 42.0 4.08e-01 83.8% 96.2%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 44.0 4.16e-01 91.2% 78.4%
3fwbA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 4.50e-01 95.6% 89.0%
1tizA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 43.0 4.36e-01 88.2% 98.5%
7xg9A01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.55 44.0 2.97e-01 89.7% 39.1%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.55 41.0 3.74e-01 83.8% 68.4%
1c07A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 3.98e-01 91.2% 73.7%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 43.0 3.44e-01 91.2% 45.3%
2aaoB00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 45.0 3.71e-01 97.1% 54.7%
1iq3A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.80e-01 92.6% 62.7%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.69e-01 77.9% 95.2%
1aj4A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.37e-01 91.2% 47.5%
6yetA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 42.0 3.95e-01 91.2% 75.8%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.53 42.0 4.11e-01 92.6% 90.7%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.80e-01 89.7% 79.3%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.05e-01 91.2% 86.3%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.90e-01 94.1% 95.2%
5v89A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.75e-01 89.7% 79.5%
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.51 41.0 3.62e-01 98.5% 60.4%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 4.21e-01 98.5% 94.5%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.60e-01 91.2% 83.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895642 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.67 56.0 3.21e-01 95.6% 95.2%
3853059 108.1.1.8 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 0.65 53.0 5.11e-01 92.6% 93.8%
3924261 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 54.0 5.31e-01 95.6% 100.0%
3527487 108.1.1.11 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › Cullin_binding 0.64 54.0 4.73e-01 97.1% 70.5%
5046227 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 4.38e-01 79.4% 83.5%
3699958 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 54.0 5.29e-01 98.5% 98.7%
3845015 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.63 53.0 4.70e-01 95.6% 82.0%
1322823 108.1.1.39 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › P2R3B_EF-hand 0.62 54.0 5.23e-01 98.5% 92.3%
3681652 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 50.0 4.92e-01 89.7% 89.0%
3270755 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.62 48.0 4.90e-01 86.8% 100.0%
3496514 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.61 51.0 2.97e-01 98.5% 94.4%
3622307 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 50.0 5.04e-01 94.1% 98.6%
3482261 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 47.0 4.51e-01 91.2% 78.8%
3547911 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.60 49.0 4.58e-01 91.2% 85.9%
3705880 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 49.0 4.61e-01 91.2% 87.1%
3596102 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 49.0 4.54e-01 94.1% 90.0%
3102851 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 49.0 4.63e-01 94.1% 79.1%
3270341 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.99e-01 80.9% 76.8%
3708891 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 50.0 4.44e-01 97.1% 81.0%
4027372 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 47.0 4.72e-01 91.2% 100.0%
3486641 108.1.1.10 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › Cbl_N2 0.58 48.0 4.56e-01 94.1% 80.0%
3918837 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 49.0 4.67e-01 95.6% 96.2%
3486838 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.58 48.0 4.56e-01 95.6% 89.4%
3611215 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 46.0 4.39e-01 94.1% 94.1%
3911180 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.57 45.0 3.51e-01 92.6% 41.8%
3712067 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 47.0 4.37e-01 98.5% 90.0%
3485448 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 44.0 4.35e-01 88.2% 93.3%
3581125 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 46.0 4.56e-01 97.1% 98.7%
3581247 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.56 44.0 4.10e-01 88.2% 73.3%
3753603 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.56 45.0 4.21e-01 94.1% 76.7%
3930545 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 45.0 4.57e-01 95.6% 100.0%
4245071 2003.1.2.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 48.0 3.18e-01 100.0% 27.7%
4937435 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.29e-01 85.3% 74.5%
3621207 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.55 45.0 4.32e-01 94.1% 90.0%
3845296 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.55 46.0 4.13e-01 97.1% 86.0%
3598264 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 44.0 3.92e-01 92.6% 66.7%
3432388 109.4.1.43 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP 0.54 45.0 3.61e-01 98.5% 52.0%
3798212 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 42.0 3.91e-01 91.2% 71.6%
3932399 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.54 43.0 3.49e-01 92.6% 48.3%
3931416 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 44.0 3.90e-01 94.1% 69.5%
3391943 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.54 42.0 3.86e-01 89.7% 75.8%
3298593 109.4.1.43 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP 0.53 41.0 2.87e-01 89.7% 31.9%
4030317 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 44.0 3.83e-01 97.1% 93.9%
3495544 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 39.0 3.62e-01 85.3% 70.7%
3740317 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.53 40.0 3.71e-01 86.8% 74.7%
1154581 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.52 41.0 3.95e-01 91.2% 81.0%
3269933 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.52 42.0 4.20e-01 91.2% 94.3%
3624135 108.1.1.27 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.51 40.0 3.85e-01 88.2% 82.5%
4025496 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.51 41.0 4.10e-01 92.6% 100.0%
2531311 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.51 43.0 3.95e-01 97.1% 91.5%
3273610 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 40.0 3.65e-01 91.2% 75.0%
3924040 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.51 42.0 4.13e-01 98.5% 94.7%
3771551 108.1.1.1 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1 0.51 42.0 4.12e-01 97.1% 96.0%
5071770 101.1.2.923 ↗ alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_PF0610 0.50 37.0 3.33e-01 79.4% 97.0%
3580640 108.1.1.21 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › SPARC_Ca_bdg 0.50 41.0 4.05e-01 98.5% 86.7%
3518101 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.50 36.0 3.25e-01 77.9% 73.0%
D2 high residues 407-592
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bv8A00 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.63 30.0 4.34e-01 97.8% 100.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4039920 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.51 26.0 3.60e-01 96.2% 100.0%
D3 high residues 757-856
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 4.18e-01 83.0% 69.4%
3hkmB00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 43.0 3.47e-01 82.0% 94.8%
2nn6C00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 44.0 3.30e-01 84.0% 91.9%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 45.0 3.38e-01 85.0% 95.6%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 4.34e-01 95.0% 99.3%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 41.0 3.79e-01 77.0% 90.6%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 47.0 3.59e-01 96.0% 87.3%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.55 43.0 3.23e-01 84.0% 95.8%
1mvpA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 38.0 3.73e-01 72.0% 94.6%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 40.0 4.02e-01 84.0% 74.3%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 48.0 4.25e-01 98.0% 100.0%
4ijaB02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 4.04e-01 95.0% 92.4%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.57e-01 72.0% 32.4%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 42.0 3.84e-01 84.0% 65.7%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.54 41.0 3.64e-01 98.0% 55.1%
2dyuA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.53 45.0 3.36e-01 98.0% 84.7%
3vglA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 46.0 4.12e-01 95.0% 100.0%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 45.0 4.09e-01 93.0% 99.2%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.19e-01 88.0% 98.0%
1z05A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 3.90e-01 95.0% 97.4%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 42.0 3.19e-01 87.0% 98.3%
5jr6A02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 41.0 3.60e-01 86.0% 80.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 33.0 3.15e-01 79.0% 57.9%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.87e-01 91.0% 100.0%
1yvuA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 42.0 3.41e-01 95.0% 76.6%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.92e-01 99.0% 81.6%
3tiiB02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 42.0 3.56e-01 95.0% 54.9%
2a8xA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 36.0 3.45e-01 92.0% 62.3%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 42.0 3.13e-01 96.0% 91.5%
3u3gA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 40.0 3.63e-01 88.0% 88.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272573 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 42.0 4.70e-01 75.0% 86.7%
3656013 11.1.1.912 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28397 0.59 46.0 4.79e-01 83.0% 96.7%
4609498 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 37.0 4.08e-01 97.0% 80.0%
3814983 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 41.0 4.59e-01 90.0% 97.3%
4127407 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.58 49.0 4.09e-01 95.0% 84.4%
3337433 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.57 41.0 4.55e-01 83.0% 95.0%
4089497 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.56 48.0 4.33e-01 94.0% 100.0%
4529129 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.56 44.0 3.48e-01 84.0% 76.7%
3604480 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.56 48.0 4.07e-01 96.0% 88.0%
4518527 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.56 46.0 4.43e-01 90.0% 94.8%
3351393 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 43.0 4.48e-01 89.0% 87.4%
3805954 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.56 46.0 4.50e-01 89.0% 84.5%
3358595 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 43.0 4.47e-01 84.0% 93.3%
4936566 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.55 46.0 3.46e-01 94.0% 98.1%
4304836 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.55 48.0 4.21e-01 98.0% 99.4%
3271756 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.93e-01 94.0% 77.1%
3977273 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.55 48.0 4.29e-01 97.0% 100.0%
3957119 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 3.79e-01 95.0% 100.0%
4938869 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.54 46.0 3.69e-01 95.0% 75.2%
3853362 243.3.1.2 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cathelicidins 0.54 40.0 3.88e-01 99.0% 67.8%
4999488 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.54 44.0 3.34e-01 89.0% 98.0%
4986742 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 36.0 4.01e-01 70.0% 91.1%
4264655 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.54 41.0 3.75e-01 82.0% 69.6%
3663612 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 40.0 3.63e-01 79.0% 85.0%
5078265 2484.1.1.6 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.54 44.0 3.38e-01 91.0% 97.9%
4990685 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.53 45.0 3.74e-01 97.0% 82.6%
3830643 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 39.0 4.14e-01 82.0% 86.7%
3230977 4099.1.1.48 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Rgr-1_C 0.53 41.0 3.81e-01 85.0% 96.9%
1149912 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 44.0 4.15e-01 93.0% 96.7%
3542721 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.72e-01 99.0% 66.7%
3278013 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 42.0 3.92e-01 90.0% 91.5%
4963032 244.2.1.15 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD 0.51 42.0 4.09e-01 89.0% 85.5%
4517494 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.51 43.0 3.99e-01 95.0% 96.9%
3366565 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.51 42.0 4.08e-01 89.0% 94.5%
3817963 2011.2.1.16 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF7894 0.51 37.0 2.85e-01 75.0% 43.6%
3971326 7503.1.1.2 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › ABC_trans_aux 0.51 39.0 3.25e-01 98.0% 46.3%
3315068 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 41.0 3.60e-01 100.0% 58.0%
4402197 11.1.1.236 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig 0.51 40.0 4.11e-01 93.0% 87.4%
5043517 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.50 43.0 3.52e-01 95.0% 75.8%
D4 medium residues 28-70_190-297
PDB
D5 medium residues 71-189
PDB
D6 medium residues 596-684_721-755
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 45.0 4.46e-01 92.7% 72.9%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 33.0 3.73e-01 85.5% 73.0%
2b3uB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 49.0 4.39e-01 94.4% 73.2%
2d27A02 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.54 32.0 3.68e-01 91.1% 83.5%
6rftA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 4.22e-01 92.7% 80.9%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 25.0 3.12e-01 96.0% 77.3%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 46.0 4.37e-01 93.5% 85.3%
4qn0B00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.51 44.0 3.53e-01 93.5% 64.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665234 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.64 51.0 5.00e-01 92.7% 77.7%
3989826 213.1.1.7 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB 0.58 46.0 4.31e-01 92.7% 68.7%
4355333 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 49.0 4.68e-01 94.4% 79.3%
3683044 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 49.0 4.10e-01 92.7% 56.0%
3278511 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 31.0 3.74e-01 91.9% 81.2%
3921742 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 51.0 4.08e-01 96.0% 87.4%
3335487 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 48.0 4.35e-01 92.7% 68.8%
3357649 213.1.1.5 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS 0.56 47.0 4.26e-01 92.7% 66.7%
5041077 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 52.0 4.44e-01 100.0% 95.8%
3883795 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.56 48.0 4.38e-01 92.7% 73.9%
3273076 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.56 48.0 4.45e-01 92.7% 73.5%
4346973 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.55 47.0 4.17e-01 92.7% 64.6%
3790600 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.55 47.0 4.25e-01 92.7% 68.5%
None — 0.55 49.0 4.33e-01 94.4% 72.9%
3869259 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.55 47.0 4.32e-01 92.7% 72.3%
3586413 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 4.63e-01 92.7% 86.9%
3932019 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 48.0 4.31e-01 94.4% 70.0%
3987853 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 4.32e-01 94.4% 72.9%
3996526 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 50.0 4.23e-01 100.0% 79.0%
3287485 213.1.1.68 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Rv0428c_C 0.54 46.0 4.19e-01 92.7% 70.0%
3793375 213.1.1.2 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N 0.54 47.0 4.40e-01 92.7% 90.7%
3742332 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 41.0 4.57e-01 86.3% 99.0%
3594893 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 48.0 4.48e-01 94.4% 81.3%
3783310 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 47.0 4.01e-01 94.4% 68.7%
3220519 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.53 46.0 4.24e-01 92.7% 71.9%
3499540 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 46.0 4.19e-01 92.7% 71.2%
3517869 213.1.1.22 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N 0.52 46.0 3.91e-01 92.7% 73.2%
3587151 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 43.0 4.45e-01 95.2% 90.0%
4996639 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 47.0 4.16e-01 100.0% 81.7%
3998011 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 45.0 4.13e-01 94.4% 73.5%
5053321 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 45.0 4.20e-01 92.7% 77.3%
4978137 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 45.0 4.24e-01 92.7% 84.8%
2582168 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 41.0 3.74e-01 93.5% 65.0%
3576971 378.1.1.1 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.51 42.0 3.54e-01 90.3% 71.0%
5050425 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 44.0 4.15e-01 94.4% 78.7%