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MW273922.1__QPZ53437.1__HTVC034P_gp03__00003
Bact-VirMW273922.1__QPZ53437.1__HTVC034P_gp03__00003
Identity
- Accession:
- MW273922 ↗
- Kingdom:
- phage
Quality
96.1
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-70
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 37.0 | 4.44e-01 | 80.6% | 92.9% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 52.0 | 3.97e-01 | 97.0% | 82.3% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.61 | 42.0 | 4.53e-01 | 80.6% | 90.7% |
| 1k1zA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 30.0 | 2.83e-01 | 83.6% | 39.7% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 29.0 | 3.27e-01 | 83.6% | 56.9% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 35.0 | 4.09e-01 | 77.6% | 100.0% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.56 | 42.0 | 3.86e-01 | 85.1% | 61.1% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.54 | 40.0 | 3.47e-01 | 82.1% | 73.2% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.54 | 39.0 | 2.97e-01 | 80.6% | 31.6% |
| 1xhhA00 | 2.60.40.1900 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain | 0.51 | 42.0 | 3.86e-01 | 94.0% | 78.0% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 43.0 | 3.46e-01 | 100.0% | 89.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046929 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 35.0 | 3.96e-01 | 92.5% | 74.0% |
| 3925581 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.60 | 44.0 | 4.42e-01 | 79.1% | 87.1% |
| 3824081 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.57 | 48.0 | 3.08e-01 | 97.0% | 44.3% |
| 5022821 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.56 | 46.0 | 4.32e-01 | 92.5% | 87.1% |
| 3702974 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.56 | 41.0 | 4.32e-01 | 88.1% | 100.0% |
| 4405445 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 40.0 | 4.02e-01 | 80.6% | 95.7% |
| 4237407 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.55 | 43.0 | 2.97e-01 | 89.6% | 41.8% |
| 3702975 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.55 | 46.0 | 4.14e-01 | 94.0% | 67.0% |
| 4994580 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.55 | 41.0 | 2.50e-01 | 82.1% | 68.7% |
| 3289119 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 2.67e-01 | 86.6% | 16.9% |
| 3231480 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 32.0 | 3.71e-01 | 77.6% | 86.7% |
| 4030857 | 3355.1.1.16 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC | 0.54 | 43.0 | 2.62e-01 | 86.6% | 44.1% |
| 1030945 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.54 | 43.0 | 3.49e-01 | 89.6% | 97.0% |
| 3719666 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.51 | 38.0 | 2.96e-01 | 85.1% | 64.6% |
| 4107632 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.51 | 37.0 | 3.48e-01 | 82.1% | 64.4% |
D2
medium
residues 74-113
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.72 | 48.0 | 4.31e-01 | 70.0% | 47.5% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.71 | 50.0 | 3.47e-01 | 75.0% | 25.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.66 | 48.0 | 3.21e-01 | 82.5% | 40.7% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.63 | 51.0 | 4.36e-01 | 100.0% | 78.4% |
| 2dceA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 3.97e-01 | 97.5% | 88.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3224618 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.76 | 56.0 | 3.23e-01 | 80.0% | 87.6% |
| 3715996 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.72 | 51.0 | 4.76e-01 | 72.5% | 60.0% |
| 3669495 | 4030.1.1.18 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › RVE6 | 0.68 | 55.0 | 5.12e-01 | 90.0% | 98.0% |
| 3463316 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.66 | 46.0 | 4.82e-01 | 75.0% | 100.0% |
| 4031958 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 49.0 | 3.24e-01 | 97.5% | 34.2% |
| 3579123 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 44.0 | 2.71e-01 | 100.0% | 21.9% |