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MW273922.1__QPZ53454.1__HTVC034P_gp20__00020

Bact-Vir

MW273922.1__QPZ53454.1__HTVC034P_gp20__00020

Identity

Accession:
MW273922 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-159
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08299.18 best Bac_DnaA_C 61.8 7.00e-17 72.8% 97.1%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.91 84.0 8.36e-01 98.9% 94.7%
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.88 79.0 7.50e-01 100.0% 82.2%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.88 46.0 5.98e-01 76.1% 88.9%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 47.0 5.99e-01 72.8% 94.4%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 43.0 5.27e-01 71.7% 77.8%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 42.0 5.19e-01 71.7% 78.7%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.78 47.0 5.91e-01 73.9% 100.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.78 41.0 5.09e-01 77.2% 83.9%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 43.0 4.61e-01 78.3% 66.3%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 42.0 5.03e-01 83.7% 83.1%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.63 46.0 4.50e-01 83.7% 69.3%
5xe7A01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.63 48.0 4.09e-01 79.3% 67.6%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.63 47.0 4.66e-01 87.0% 75.0%
2jrtA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.68e-01 84.8% 81.4%
2mg4A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 43.0 4.89e-01 75.0% 98.5%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 4.28e-01 79.3% 74.1%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.60 52.0 4.48e-01 92.4% 95.7%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.57 41.0 3.62e-01 85.9% 51.9%
2b6cA02 1.25.40.290 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains 0.56 40.0 3.95e-01 72.8% 92.8%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.77e-01 80.4% 63.4%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.61e-01 81.5% 60.8%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 45.0 3.26e-01 88.0% 94.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 37.0 4.04e-01 71.7% 87.7%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.45e-01 78.3% 60.9%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 39.0 3.38e-01 78.3% 73.4%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.53e-01 81.5% 59.6%
1bdp002 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 35.0 3.36e-01 100.0% 57.8%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 46.0 4.47e-01 100.0% 89.1%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.79e-01 91.3% 62.8%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 37.0 3.51e-01 78.3% 80.4%
1nubA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 44.0 3.85e-01 100.0% 81.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4165809 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 83.0 8.62e-01 95.7% 100.0%
4604979 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 86.0 8.21e-01 100.0% 85.6%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 83.0 8.42e-01 96.7% 96.7%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 85.0 8.44e-01 100.0% 94.7%
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 82.0 8.35e-01 96.7% 96.7%
4533441 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 85.0 8.42e-01 100.0% 94.7%
4437729 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 83.0 8.09e-01 100.0% 89.0%
4270831 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 84.0 7.94e-01 98.9% 84.8%
4051624 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.93e-01 98.9% 84.8%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 84.0 7.97e-01 100.0% 85.7%
4524648 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.93e-01 100.0% 85.7%
4102935 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.86e-01 98.9% 84.8%
4281674 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.86e-01 98.9% 84.8%
4559046 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.93e-01 100.0% 85.7%
4174198 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 82.0 7.99e-01 98.9% 89.0%
4146099 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 83.0 8.25e-01 97.8% 95.8%
4125972 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 82.0 7.95e-01 98.9% 89.0%
3385990 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 83.0 7.85e-01 100.0% 85.7%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 82.0 8.32e-01 97.8% 98.9%
4601417 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.89 82.0 8.16e-01 100.0% 94.7%
144712 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 78.0 7.41e-01 100.0% 80.4%
4346134 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 82.0 7.83e-01 100.0% 86.5%
4266587 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 81.0 8.00e-01 100.0% 93.7%
4606821 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 83.0 8.02e-01 98.9% 92.0%
4606105 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 82.0 7.98e-01 100.0% 91.0%
4379676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.85 79.0 7.54e-01 98.9% 86.7%
3512259 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.85 79.0 7.55e-01 100.0% 99.0%
3969325 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.83 45.0 5.18e-01 72.8% 71.4%
4174590 101.1.2.61 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r4 0.81 47.0 5.59e-01 71.7% 83.1%
4971221 101.1.6.42 alpha arrays › HTH › HTH › TrpR › HTH_24 0.78 53.0 4.96e-01 71.7% 58.2%
4595970 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.77 49.0 5.83e-01 81.5% 98.3%
4958294 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 49.0 5.88e-01 79.3% 100.0%
4514592 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.76 50.0 5.08e-01 82.6% 68.9%
4458965 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.75 50.0 5.32e-01 71.7% 77.5%
4998511 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.75 52.0 5.18e-01 71.7% 70.5%
4958364 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 51.0 5.11e-01 85.9% 71.6%
3685911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.25e-01 92.4% 80.0%
4966195 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.66 47.0 5.34e-01 81.5% 98.6%
5042483 101.1.6.38 alpha arrays › HTH › HTH › TrpR › Sigma70_r4 0.64 56.0 5.31e-01 94.6% 100.0%
5014241 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.63 37.0 3.90e-01 75.0% 62.4%
5007495 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.63 57.0 5.10e-01 97.8% 88.8%
5081088 101.1.2.932 alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc 0.63 45.0 4.74e-01 75.0% 83.1%
4391758 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.63 45.0 4.49e-01 82.6% 72.6%
4989143 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 56.0 5.30e-01 97.8% 100.0%
4970998 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.62 47.0 4.63e-01 80.4% 77.0%
3589532 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 43.0 4.23e-01 78.3% 68.4%
3376425 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.61 47.0 4.92e-01 85.9% 88.2%
4954922 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 54.0 5.21e-01 96.7% 91.4%
5058606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.49e-01 84.8% 85.3%
3961604 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.59 44.0 4.32e-01 78.3% 99.0%
4093687 101.1.1.107 alpha arrays › HTH › HTH › Three-helical HTH › DUF134 0.59 48.0 4.89e-01 88.0% 88.9%
5002651 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.59 45.0 4.49e-01 81.5% 96.8%
3448782 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.59 49.0 4.77e-01 88.0% 91.0%
4556247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 48.0 3.47e-01 94.6% 97.6%
3890415 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.55 46.0 4.64e-01 94.6% 93.7%
4962049 101.1.1.557 alpha arrays › HTH › HTH › Three-helical HTH › DUF7437 0.54 44.0 4.64e-01 88.0% 100.0%
3908686 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 48.0 4.65e-01 96.7% 96.2%
4997105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.91e-01 81.5% 81.2%
D2 medium residues 1-65
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 47.0 3.84e-01 81.5% 91.5%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.57 42.0 3.36e-01 78.5% 73.8%
2ko6A00 1.10.1580.20 Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › Protein of unknown function DUF1040 0.51 35.0 3.23e-01 72.3% 62.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3677321 2484.1.1.165 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 54.0 3.46e-01 73.8% 16.3%
3500715 633.24.1.2 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.75 52.0 4.89e-01 72.3% 58.7%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.74 50.0 4.69e-01 70.8% 65.0%
3271281 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.69 52.0 5.11e-01 80.0% 78.6%
3495604 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.68 48.0 4.07e-01 76.9% 47.0%
4138369 4993.1.1.1 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC 0.66 46.0 4.06e-01 75.4% 50.5%
4947024 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.63 46.0 4.03e-01 81.5% 52.6%
4326169 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.62 45.0 4.20e-01 81.5% 67.8%
4999078 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.61 53.0 3.01e-01 100.0% 65.6%
4642625 4993.1.1.1 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC 0.61 44.0 3.93e-01 81.5% 52.6%
3499735 1203.1.2.0 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.59 42.0 3.19e-01 76.9% 34.5%
3807111 7579.1.1.42 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.56 40.0 2.62e-01 75.4% 24.4%