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MW273923.1__QPZ53525.1__HTVC035P_gp28__00028
Bact-VirMW273923.1__QPZ53525.1__HTVC035P_gp28__00028
Identity
- Accession:
- MW273923 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-76
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.75 | 60.0 | 5.38e-01 | 85.5% | 83.3% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 52.0 | 5.35e-01 | 81.6% | 90.5% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 49.0 | 3.93e-01 | 76.3% | 91.4% |
| 3hl1B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 47.0 | 3.44e-01 | 75.0% | 89.4% |
| 1u8vB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.64 | 51.0 | 3.77e-01 | 88.2% | 71.4% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 48.0 | 4.65e-01 | 84.2% | 89.7% |
| 5k9nB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 45.0 | 3.36e-01 | 77.6% | 48.8% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.62 | 51.0 | 4.15e-01 | 93.4% | 86.9% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.60 | 44.0 | 4.64e-01 | 80.3% | 97.0% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.59 | 47.0 | 4.73e-01 | 88.2% | 93.6% |
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.56 | 43.0 | 3.04e-01 | 82.9% | 90.0% |
| 2i06A02 | 3.30.54.10 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.56 | 40.0 | 4.07e-01 | 78.9% | 85.7% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 46.0 | 4.01e-01 | 94.7% | 99.2% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.54 | 42.0 | 2.64e-01 | 84.2% | 68.1% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 46.0 | 3.78e-01 | 98.7% | 77.2% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 36.0 | 3.88e-01 | 97.4% | 100.0% |
| 2ifaB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 41.0 | 3.15e-01 | 93.4% | 57.7% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 42.0 | 3.19e-01 | 98.7% | 86.9% |
| 1st0A02 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.50 | 43.0 | 3.25e-01 | 96.1% | 100.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3325401 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.72 | 51.0 | 3.38e-01 | 75.0% | 72.5% |
| 3662390 | 632.15.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › GAUT_1 | 0.68 | 50.0 | 4.68e-01 | 78.9% | 75.8% |
| 3288703 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.67 | 53.0 | 4.18e-01 | 85.5% | 96.1% |
| 4597667 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.67 | 53.0 | 4.40e-01 | 86.8% | 65.9% |
| 3931393 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.66 | 50.0 | 4.21e-01 | 80.3% | 56.0% |
| 3588616 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.66 | 52.0 | 4.68e-01 | 85.5% | 83.8% |
| 3223243 | 6165.1.1.1 ↗ | beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg | 0.65 | 52.0 | 3.57e-01 | 86.8% | 78.2% |
| 4010637 | 3809.1.1.2 ↗ | alpha bundles › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Uncharacterized protein CV0426 › Caudo_TAP | 0.63 | 43.0 | 4.46e-01 | 71.1% | 87.1% |
| 3805389 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 53.0 | 4.49e-01 | 93.4% | 93.6% |
| 2816426 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.63 | 45.0 | 3.31e-01 | 77.6% | 47.2% |
| 4020085 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 54.0 | 3.39e-01 | 97.4% | 39.3% |
| 3389038 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.61 | 44.0 | 3.24e-01 | 77.6% | 49.1% |
| 5056781 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.61 | 44.0 | 3.65e-01 | 77.6% | 45.5% |
| 3173181 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.61 | 49.0 | 4.47e-01 | 86.8% | 67.0% |
| 2172431 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.57 | 43.0 | 2.70e-01 | 82.9% | 17.2% |
| 4344927 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.55 | 40.0 | 4.20e-01 | 80.3% | 88.6% |
| 4617970 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.54 | 41.0 | 3.36e-01 | 86.8% | 88.5% |
| 3560248 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 41.0 | 2.55e-01 | 84.2% | 36.6% |
| 4591776 | 227.1.1.7 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 | 0.54 | 45.0 | 3.91e-01 | 100.0% | 100.0% |
| 5054516 | 842.1.1.0 ↗ | a+b two layers › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 › Thymidylate synthase-complementing protein Thy1 | 0.53 | 45.0 | 3.45e-01 | 97.4% | 87.0% |
| 3536764 | 101.1.11.98 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › Pescadillo_N | 0.52 | 40.0 | 3.71e-01 | 84.2% | 82.0% |
| 3897876 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 36.0 | 2.74e-01 | 76.3% | 34.1% |
| 2331973 | 364.1.1.1 ↗ | few secondary structure elements › TAZ domain › TAZ domain › TAZ domain › zf-TAZ | 0.51 | 34.0 | 2.91e-01 | 73.7% | 40.8% |
| 4127813 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.51 | 41.0 | 3.78e-01 | 96.1% | 86.4% |
D2
medium
residues 77-135
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bmeA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 43.0 | 3.54e-01 | 94.9% | 52.8% |
| 1hbkA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.54 | 41.0 | 3.72e-01 | 86.4% | 59.6% |
| 2ktaA01 | 6.10.140.530 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 39.0 | 3.98e-01 | 78.0% | 100.0% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.53 | 36.0 | 3.39e-01 | 71.2% | 59.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3578231 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.57 | 43.0 | 4.02e-01 | 83.1% | 68.0% |
| 3413790 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.52 | 40.0 | 3.70e-01 | 86.4% | 66.3% |