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MW273925.1__QPZ53626.1__HTVC203P_gp02__00002

Bact-Vir

MW273925.1__QPZ53626.1__HTVC203P_gp02__00002

Identity

Accession:
MW273925 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kzgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.80 39.0 2.96e-01 71.7% 22.5%
5wjpA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.79 39.0 2.87e-01 71.7% 20.4%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.75 41.0 3.54e-01 93.3% 34.8%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.72 41.0 3.86e-01 100.0% 46.5%
2g0iA00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.72 42.0 3.36e-01 100.0% 31.5%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 3.94e-01 70.0% 42.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.14e-01 88.3% 62.0%
3i6vA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 39.0 2.99e-01 71.7% 26.9%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.66 62.0 4.17e-01 100.0% 36.3%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 58.0 4.55e-01 100.0% 50.4%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.02e-01 95.0% 63.8%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 37.0 3.16e-01 76.7% 33.3%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.62 38.0 3.97e-01 75.0% 66.7%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.06e-01 85.0% 86.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.52e-01 98.3% 93.0%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 56.0 4.15e-01 100.0% 93.9%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.65e-01 78.3% 76.5%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 3.46e-01 70.0% 40.6%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 42.0 2.67e-01 86.7% 14.9%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 34.0 3.06e-01 91.7% 36.9%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 3.64e-01 88.3% 63.2%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 42.0 2.89e-01 90.0% 22.8%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.48e-01 88.3% 58.7%
1d2iA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.58 46.0 3.25e-01 93.3% 68.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.60e-01 91.7% 65.2%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.19e-01 86.7% 76.3%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.40e-01 88.3% 61.4%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.66e-01 96.7% 49.5%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.55 45.0 3.77e-01 98.3% 63.1%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.39e-01 88.3% 63.5%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.55 48.0 3.85e-01 100.0% 53.7%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.34e-01 88.3% 59.2%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.37e-01 88.3% 63.2%
1vehA01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.55 38.0 3.56e-01 73.3% 93.3%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.37e-01 90.0% 64.2%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 40.0 3.24e-01 90.0% 41.2%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.53 41.0 3.36e-01 88.3% 42.4%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.11e-01 71.7% 43.8%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 43.0 3.31e-01 88.3% 45.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 43.0 3.14e-01 91.7% 42.8%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 32.0 2.98e-01 93.3% 44.6%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.52e-01 88.3% 65.0%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.09e-01 98.3% 83.9%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.51 44.0 3.80e-01 96.7% 69.5%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 43.0 3.41e-01 100.0% 93.2%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164240 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.84 43.0 4.05e-01 90.0% 42.9%
3992245 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.84 31.0 2.86e-01 85.0% 29.3%
3873803 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.81 38.0 3.30e-01 85.0% 31.1%
3318217 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.79 42.0 3.83e-01 100.0% 40.0%
5010819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 51.0 3.76e-01 100.0% 26.7%
3781870 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.76 42.0 3.68e-01 100.0% 38.8%
4067342 5069.1.1.15 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm 0.76 59.0 3.57e-01 100.0% 14.3%
4099043 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.75 42.0 3.87e-01 95.0% 44.0%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.75 55.0 4.77e-01 78.3% 97.8%
4025375 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.73 61.0 4.87e-01 91.7% 57.4%
3238364 109.4.1.32 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G 0.72 49.0 3.03e-01 100.0% 12.3%
3528591 304.24.1.24 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V-ATPase_C 0.71 38.0 3.09e-01 91.7% 30.5%
3409557 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.70 49.0 3.23e-01 100.0% 17.3%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 47.0 3.94e-01 70.0% 42.7%
3937938 109.4.1.47 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N,Xpo1,CRM1_C,CRM1_repeat,CRM1_repeat_2,CRM1_repeat_3 0.69 48.0 2.61e-01 100.0% 4.2%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 4.07e-01 81.7% 62.3%
4965204 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.69 41.0 3.22e-01 93.3% 30.8%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.67 62.0 5.31e-01 100.0% 65.6%
3490375 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.67 49.0 3.23e-01 100.0% 19.6%
4973377 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.66 57.0 4.15e-01 98.3% 88.2%
4494181 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 62.0 4.50e-01 100.0% 84.8%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 47.0 3.43e-01 80.0% 51.7%
3499265 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.64 54.0 3.43e-01 98.3% 65.7%
3396714 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 4.31e-01 100.0% 86.2%
4025072 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 57.0 4.51e-01 98.3% 87.0%
3471111 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.62 50.0 3.38e-01 88.3% 93.4%
3457354 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 56.0 4.18e-01 100.0% 86.2%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.62 54.0 4.24e-01 100.0% 51.5%
3410006 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.61 47.0 3.00e-01 86.7% 16.9%
4002132 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.60 56.0 3.40e-01 100.0% 18.5%
3724623 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.60 55.0 3.18e-01 100.0% 12.5%
4978090 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.59 43.0 3.06e-01 81.7% 44.7%
3587282 142.1.1.10 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.59 43.0 4.18e-01 81.7% 72.9%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.58 46.0 3.29e-01 88.3% 67.5%
4250601 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.58 48.0 3.58e-01 96.7% 38.8%
5011620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 3.79e-01 80.0% 92.2%
3622028 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.58 40.0 3.09e-01 71.7% 73.6%
4441043 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 47.0 3.59e-01 96.7% 40.0%
2494143 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 38.0 3.24e-01 70.0% 38.7%
3782635 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.57 51.0 3.76e-01 100.0% 60.0%
5065027 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 44.0 3.40e-01 86.7% 64.1%
3937515 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 51.0 3.16e-01 100.0% 26.4%
3838105 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.57 32.0 3.08e-01 93.3% 45.7%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 43.0 3.60e-01 83.3% 97.3%
4978825 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.56 42.0 3.47e-01 83.3% 72.5%
3290652 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.56 43.0 3.78e-01 85.0% 55.6%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.56 51.0 3.38e-01 100.0% 29.8%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 43.0 3.12e-01 85.0% 51.4%
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.56 42.0 2.60e-01 85.0% 13.0%
3943749 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 3.04e-01 93.3% 39.2%
3734132 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.54 47.0 3.02e-01 100.0% 81.0%
3605264 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.54 49.0 2.99e-01 100.0% 78.8%
3664519 5051.1.1.6 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.54 45.0 2.74e-01 100.0% 52.7%
3841567 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.53 46.0 3.17e-01 98.3% 82.8%
5036311 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.53 38.0 3.33e-01 80.0% 98.0%
3200582 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.52 44.0 3.42e-01 98.3% 44.8%
3333193 102.3.1.1 alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain › EIF_2_alpha 0.51 42.0 3.42e-01 88.3% 80.0%
None 0.51 44.0 3.07e-01 100.0% 28.4%
4523828 101.26.1.2 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.51 45.0 3.40e-01 96.7% 41.4%
4191334 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 41.0 3.39e-01 100.0% 97.0%
3508428 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.89e-01 86.7% 31.7%
3380863 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.51 46.0 2.58e-01 100.0% 21.1%
4995767 2004.1.1.23 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.50 45.0 2.94e-01 100.0% 97.4%
5055466 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.50 37.0 3.12e-01 83.3% 99.1%
1211453 2498.1.1.23 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.50 40.0 2.32e-01 93.3% 93.1%