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MW286267.1__QQO90828.1__X__00012

Bact-Vir

MW286267.1__QQO90828.1__X__00012

Identity

Accession:
MW286267 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Pseudomonas_phage_Misse

TaxID: 2801386

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-89
PDB
Domain cluster: rep: NC_047778.1__YP_009787312.1__QLL94_gp12__00012__D2-66
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.74 42.0 3.70e-01 100.0% 39.5%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 5.33e-01 100.0% 96.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 44.0 5.11e-01 100.0% 91.4%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.69 40.0 3.57e-01 100.0% 39.5%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 39.0 4.38e-01 98.8% 79.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.42e-01 100.0% 72.7%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 35.0 3.51e-01 78.8% 50.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 3.90e-01 100.0% 70.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 34.0 3.90e-01 82.4% 77.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.59 33.0 3.58e-01 80.0% 63.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 35.0 4.02e-01 91.8% 86.4%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 34.0 3.03e-01 85.9% 41.3%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 34.0 4.01e-01 90.6% 96.2%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 35.0 3.88e-01 91.8% 84.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 36.0 3.90e-01 95.3% 80.3%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 32.0 3.79e-01 89.4% 96.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.65e-01 95.3% 94.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 29.0 3.45e-01 85.9% 76.3%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 39.0 4.05e-01 98.8% 86.8%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.60e-01 95.3% 95.6%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 32.0 3.77e-01 90.6% 91.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 32.0 3.59e-01 81.2% 76.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.59e-01 100.0% 75.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.08e-01 95.3% 87.7%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.53 39.0 3.81e-01 100.0% 71.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.47e-01 97.6% 82.1%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 34.0 3.63e-01 94.1% 77.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 35.0 3.32e-01 75.3% 57.4%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 31.0 3.68e-01 90.6% 98.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 32.0 3.66e-01 100.0% 87.1%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.51 45.0 3.69e-01 97.6% 61.9%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 37.0 3.98e-01 91.8% 88.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.51 34.0 3.80e-01 100.0% 95.2%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 31.0 3.52e-01 85.9% 81.2%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.50 37.0 4.03e-01 97.6% 100.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 29.0 3.38e-01 85.9% 92.2%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 4.30e-01 95.3% 95.5%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.17e-01 78.8% 59.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.73 44.0 5.43e-01 98.8% 100.0%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.71 44.0 5.22e-01 100.0% 96.4%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.70 40.0 4.80e-01 100.0% 87.3%
5015352 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.42e-01 100.0% 66.3%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 41.0 4.59e-01 100.0% 80.0%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.78e-01 100.0% 88.3%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.54e-01 95.3% 90.9%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 42.0 4.44e-01 100.0% 76.0%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 3.86e-01 100.0% 56.4%
1513837 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 32.0 3.76e-01 97.6% 75.0%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 37.0 3.94e-01 100.0% 72.0%
5026824 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.74e-01 100.0% 70.0%
3967128 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 35.0 3.87e-01 82.4% 74.3%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.58 39.0 4.30e-01 100.0% 92.3%
5022798 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 34.0 2.14e-01 89.4% 10.0%
4407054 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 34.0 3.90e-01 91.8% 83.3%
4163458 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 34.0 3.97e-01 92.9% 90.9%
3964664 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.57 35.0 3.80e-01 82.4% 76.5%
3910933 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 33.0 3.74e-01 92.9% 81.7%
3987332 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 33.0 3.90e-01 91.8% 90.9%
4071917 4.1.1.111 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.56 29.0 3.61e-01 87.1% 84.0%
4671845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 34.0 3.73e-01 92.9% 78.5%
4561487 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 33.0 3.87e-01 90.6% 92.7%
3212968 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 47.0 4.06e-01 95.3% 86.7%
4039571 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 31.0 3.72e-01 84.7% 85.5%
4971071 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 31.0 3.70e-01 84.7% 85.5%
3404845 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 46.0 4.51e-01 95.3% 90.5%
4241924 4.1.1.93 ↗ beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.54 35.0 3.44e-01 100.0% 61.1%
4039507 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 32.0 3.67e-01 91.8% 89.1%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.53 31.0 3.20e-01 100.0% 57.6%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 37.0 2.71e-01 74.1% 58.5%
4076873 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 30.0 3.57e-01 83.5% 83.6%
5055172 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 31.0 3.57e-01 91.8% 87.3%
4243071 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.53 31.0 3.63e-01 90.6% 89.1%
1178369 705.1.1.1 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.53 29.0 3.59e-01 91.8% 93.9%
1030876 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 32.0 3.47e-01 91.8% 74.3%
4068291 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 31.0 3.47e-01 91.8% 80.0%
3973362 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 31.0 3.21e-01 90.6% 60.0%
5056181 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 30.0 3.50e-01 89.4% 87.3%
5020520 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.51 37.0 3.64e-01 95.3% 71.1%
5030007 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 36.0 3.78e-01 95.3% 82.7%
4114201 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 31.0 3.40e-01 91.8% 75.4%
4336845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 30.0 3.40e-01 90.6% 80.0%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.51 31.0 3.37e-01 90.6% 76.9%
3305914 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 26.0 2.47e-01 76.5% 38.1%
3731902 304.107.1.7 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › POP1_N+POPLD 0.50 44.0 2.87e-01 100.0% 64.0%