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MW291017.1__QPL14103.1__SEA_TURKISHDELIGHT_74__00074

Bact-Vir

MW291017.1__QPL14103.1__SEA_TURKISHDELIGHT_74__00074

Identity

Accession:
MW291017 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-51
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.88 68.0 4.11e-01 100.0% 14.2%
4uqfG01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.73 55.0 5.37e-01 100.0% 75.0%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 57.0 4.90e-01 100.0% 57.3%
4dhxB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.69 54.0 4.45e-01 100.0% 46.2%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.69 49.0 4.37e-01 95.7% 53.8%
7e5aB02 1.20.1000.10 Mainly Alpha › Up-down Bundle › Signaling Protein - Interferon-induced Guanylate-binding Protein 1; Chain A, domain 1 › Guanylate-binding protein, C-terminal domain 0.67 59.0 3.99e-01 100.0% 29.3%
3vkgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.65 55.0 4.29e-01 100.0% 42.7%
4am6A03 3.30.420.580 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 42.0 2.65e-01 83.0% 12.4%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 56.0 4.74e-01 100.0% 59.5%
3eupB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 51.0 3.37e-01 100.0% 21.0%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.63 53.0 3.94e-01 100.0% 44.4%
4qiwK00 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.62 53.0 5.07e-01 97.9% 91.1%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 3.46e-01 100.0% 23.1%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 50.0 3.88e-01 95.7% 77.7%
5k3hA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.61 47.0 3.48e-01 87.2% 33.1%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.61 46.0 3.85e-01 100.0% 46.1%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.85e-01 91.5% 55.2%
2pgsA03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.59 48.0 3.80e-01 95.7% 44.3%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 42.0 3.12e-01 76.6% 83.2%
1kg2A01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.57 47.0 3.68e-01 97.9% 85.7%
4zjpA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 3.46e-01 100.0% 92.4%
4wksC03 1.10.1400.10 Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region 0.56 46.0 3.18e-01 100.0% 27.5%
6lo8F01 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.55 44.0 4.04e-01 100.0% 66.7%
5m8cB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.78e-01 95.7% 48.7%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.54 44.0 4.05e-01 100.0% 100.0%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.54 43.0 2.98e-01 91.5% 59.3%
3b34A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.53 43.0 3.13e-01 100.0% 39.0%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.53 46.0 4.24e-01 93.6% 96.6%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 37.0 3.37e-01 72.3% 76.6%
1bccH00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.53 42.0 3.93e-01 100.0% 95.5%
1gheA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.03e-01 100.0% 28.2%
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 44.0 3.84e-01 95.7% 90.1%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.51 43.0 3.31e-01 95.7% 56.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3231907 2006.1.4.39 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › C_tripleX 0.78 59.0 6.00e-01 100.0% 86.7%
3586204 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 58.0 5.26e-01 97.9% 69.2%
5044059 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.68 60.0 3.96e-01 100.0% 24.7%
5073864 627.1.1.0 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain 0.67 57.0 4.55e-01 100.0% 47.0%
3420861 5076.2.1.10 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.67 59.0 3.56e-01 100.0% 19.7%
3298325 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.66 54.0 5.51e-01 100.0% 95.6%
3226912 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.65 50.0 3.50e-01 100.0% 24.8%
3786619 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.64 55.0 4.44e-01 100.0% 49.5%
3554599 159.1.2.4 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like 0.63 45.0 3.35e-01 87.2% 28.8%
3355320 3525.1.1.1 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.63 53.0 4.59e-01 100.0% 61.3%
4872570 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.63 54.0 5.20e-01 100.0% 94.4%
3441669 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.62 51.0 5.27e-01 95.7% 97.8%
3390239 3525.1.1.0 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.62 53.0 4.83e-01 100.0% 76.9%
3721985 7512.1.1.18 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.62 50.0 2.97e-01 95.7% 11.5%
4012672 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 50.0 2.81e-01 95.7% 6.9%
4985531 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.62 54.0 4.97e-01 97.9% 81.7%
3212929 3525.1.1.1 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET 0.61 51.0 4.61e-01 100.0% 81.4%
5018969 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.61 53.0 3.43e-01 100.0% 20.4%
169819 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.60 51.0 3.20e-01 97.9% 18.0%
3734118 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.60 51.0 3.44e-01 95.7% 27.7%
3786246 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 51.0 4.38e-01 97.9% 61.3%
3838282 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 48.0 3.88e-01 100.0% 46.3%
3987595 5042.1.1.1 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA 0.58 49.0 4.48e-01 100.0% 93.8%
3285244 5063.1.1.19 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › DUF2277 0.58 46.0 4.68e-01 97.9% 100.0%
3579763 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 49.0 3.74e-01 95.7% 40.9%
3630583 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.57 48.0 3.70e-01 95.7% 44.5%
4123079 4168.1.1.0 alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.57 40.0 3.87e-01 76.6% 80.0%
3727164 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.56 49.0 3.03e-01 100.0% 97.6%
4682458 160.1.1.1 alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C 0.54 43.0 3.20e-01 100.0% 39.3%
3484869 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 46.0 2.95e-01 100.0% 58.3%
3566658 2006.1.4.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.53 42.0 3.80e-01 100.0% 66.7%
3309682 159.1.2.2 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG 0.53 46.0 3.46e-01 95.7% 48.2%
3270778 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.51 39.0 3.31e-01 97.9% 46.0%
3578586 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.50 38.0 2.20e-01 95.7% 66.2%
D2 high residues 171-226
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ikmA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.68 55.0 4.60e-01 87.5% 82.8%
4nn1A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.05e-01 89.3% 76.6%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.60e-01 76.8% 87.5%
D3 medium residues 243-359
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.65 41.0 4.97e-01 70.9% 100.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 34.0 4.37e-01 95.7% 96.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 36.0 4.43e-01 70.9% 98.6%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 24.0 3.17e-01 84.6% 66.1%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 30.0 3.14e-01 100.0% 58.7%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 32.0 3.82e-01 87.2% 93.2%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.52 28.0 3.32e-01 89.7% 78.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 35.0 4.36e-01 72.6% 86.2%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 33.0 4.31e-01 89.7% 84.6%
5073223 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 32.0 3.76e-01 90.6% 67.1%
5024154 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 32.0 3.75e-01 97.4% 67.1%
3978624 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 37.0 3.63e-01 88.9% 51.5%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.63 33.0 4.13e-01 88.9% 82.9%
3463181 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 34.0 4.22e-01 95.7% 87.1%
5046975 1.1.7.21 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.62 31.0 3.76e-01 96.6% 71.2%
3629145 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 35.0 4.54e-01 91.5% 100.0%
3401559 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 33.0 4.33e-01 88.9% 100.0%
3679595 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.59 36.0 4.35e-01 93.2% 95.9%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 33.0 4.19e-01 93.2% 100.0%
3475756 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 33.0 3.99e-01 91.5% 93.3%
4029327 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.55 28.0 3.35e-01 100.0% 73.3%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 34.0 4.08e-01 83.8% 100.0%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 33.0 3.79e-01 91.5% 87.1%
4000316 1.1.7.45 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.52 32.0 3.50e-01 97.4% 73.0%