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MW291017.1__QPL14108.1__SEA_TURKISHDELIGHT_79__00079
Bact-VirMW291017.1__QPL14108.1__SEA_TURKISHDELIGHT_79__00079
Identity
- Accession:
- MW291017 ↗
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Taxonomy
TaxID: 2793708
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68_129-154
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 27.0 | 3.45e-01 | 89.4% | 51.7% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.68 | 42.0 | 4.18e-01 | 93.6% | 58.0% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.63 | 40.0 | 4.44e-01 | 78.7% | 81.1% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.60 | 46.0 | 4.21e-01 | 80.9% | 100.0% |
| 3lfuA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 33.0 | 3.80e-01 | 92.6% | 72.9% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 47.0 | 3.26e-01 | 84.0% | 49.2% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 41.0 | 2.91e-01 | 72.3% | 33.6% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 41.0 | 4.01e-01 | 73.4% | 77.2% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 4.44e-01 | 83.0% | 95.9% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 40.0 | 3.37e-01 | 81.9% | 44.8% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.55 | 43.0 | 3.39e-01 | 83.0% | 70.4% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 44.0 | 4.12e-01 | 88.3% | 97.4% |
| 3qsgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 44.0 | 4.15e-01 | 88.3% | 100.0% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 42.0 | 4.14e-01 | 83.0% | 86.3% |
| 5figA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 37.0 | 3.71e-01 | 78.7% | 68.0% |
| 3c02A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.53 | 46.0 | 3.48e-01 | 97.9% | 96.7% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 43.0 | 4.23e-01 | 86.2% | 86.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 43.0 | 4.20e-01 | 86.2% | 89.3% |
| 4n4pD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 37.0 | 2.68e-01 | 72.3% | 40.3% |
| 5fzsA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 41.0 | 3.94e-01 | 81.9% | 76.6% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 41.0 | 3.67e-01 | 87.2% | 99.3% |
| 3wscA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.51 | 45.0 | 3.37e-01 | 100.0% | 90.8% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.51 | 42.0 | 3.30e-01 | 87.2% | 80.6% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.50 | 40.0 | 3.59e-01 | 90.4% | 92.3% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3341235 | 109.46.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › CTLH | 0.69 | 48.0 | 4.36e-01 | 92.6% | 54.4% |
| 3576779 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.68 | 37.0 | 3.50e-01 | 86.2% | 43.5% |
| 3830860 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.66 | 47.0 | 4.15e-01 | 92.6% | 51.1% |
| 3516873 | 159.1.1.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › DUF1599 | 0.65 | 34.0 | 3.72e-01 | 86.2% | 60.0% |
| 3809780 | 109.4.1.1391 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB, Sec10_N | 0.65 | 48.0 | 2.88e-01 | 78.7% | 15.7% |
| 3685185 | 192.17.1.10 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › eIF-3c_N | 0.62 | 43.0 | 3.95e-01 | 84.0% | 55.8% |
| 3385850 | 1075.5.1.2 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MurJ | 0.62 | 45.0 | 3.33e-01 | 76.6% | 66.4% |
| 4072293 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 43.0 | 2.75e-01 | 72.3% | 39.6% |
| 3991299 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.61 | 47.0 | 4.95e-01 | 84.0% | 95.3% |
| 3193914 | 109.38.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Telomere length regulation protein TEL2 › Telomere length regulation protein TEL2 › Telomere_reg-2 | 0.59 | 48.0 | 2.93e-01 | 89.4% | 43.5% |
| 4021696 | 109.4.1.307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 | 0.58 | 40.0 | 2.72e-01 | 72.3% | 45.2% |
| 3773103 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 43.0 | 2.97e-01 | 79.8% | 31.4% |
| 4578393 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.57 | 47.0 | 3.75e-01 | 90.4% | 98.9% |
| 3659174 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.57 | 43.0 | 4.24e-01 | 81.9% | 96.0% |
| 3304974 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.56 | 46.0 | 3.22e-01 | 86.2% | 57.5% |
| 3467700 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.56 | 42.0 | 3.99e-01 | 80.9% | 90.4% |
| 4955703 | 1015.1.1.2 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth | 0.55 | 47.0 | 3.59e-01 | 95.7% | 92.3% |
| 60079 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.59e-01 | 90.4% | 87.6% |
| 3498860 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 41.0 | 2.82e-01 | 79.8% | 46.5% |
| 3795092 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.54 | 42.0 | 3.71e-01 | 81.9% | 79.3% |
| 5001327 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.54 | 41.0 | 4.24e-01 | 85.1% | 84.4% |
| 4403090 | 191.1.1.50 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › SlmA-like_C | 0.54 | 43.0 | 3.75e-01 | 86.2% | 93.1% |
| 3722567 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.54 | 44.0 | 3.37e-01 | 89.4% | 74.5% |
| 4970979 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.54 | 39.0 | 3.75e-01 | 79.8% | 67.6% |
| 3596697 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 40.0 | 3.83e-01 | 79.8% | 93.6% |
| 3735343 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.53 | 44.0 | 3.41e-01 | 95.7% | 72.3% |
| 3932719 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 44.0 | 3.41e-01 | 92.6% | 84.5% |
| 3829773 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.52 | 43.0 | 3.26e-01 | 89.4% | 58.2% |
| 3724046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 3.25e-01 | 98.9% | 40.0% |
| 3356095 | 601.37.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 | 0.52 | 42.0 | 3.89e-01 | 87.2% | 90.8% |
| 4340169 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.52 | 43.0 | 3.92e-01 | 89.4% | 72.4% |
| 4683333 | 138.1.1.5 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 | 0.52 | 38.0 | 3.55e-01 | 78.7% | 100.0% |
| 3612915 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 39.0 | 3.84e-01 | 81.9% | 89.5% |
| 3278249 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.51 | 45.0 | 3.15e-01 | 97.9% | 50.8% |
| 4843075 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.51 | 38.0 | 3.80e-01 | 83.0% | 78.1% |
| 3837680 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 36.0 | 3.05e-01 | 76.6% | 70.9% |
| 3808331 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.50 | 44.0 | 3.11e-01 | 98.9% | 65.9% |
D2
medium
residues 69-128
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3myvA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.77 | 61.0 | 4.06e-01 | 86.7% | 60.3% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.77 | 52.0 | 4.03e-01 | 70.0% | 37.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.75 | 54.0 | 4.24e-01 | 75.0% | 49.6% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.75 | 51.0 | 3.90e-01 | 71.7% | 47.8% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.75 | 50.0 | 5.33e-01 | 75.0% | 80.8% |
| 3lcvB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 50.0 | 3.42e-01 | 73.3% | 47.0% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 51.0 | 4.71e-01 | 75.0% | 76.0% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 49.0 | 4.85e-01 | 73.3% | 74.6% |
| 3k7xA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 58.0 | 3.63e-01 | 96.7% | 53.6% |
| 4mu9B00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.67 | 55.0 | 3.44e-01 | 96.7% | 51.8% |
| 2xpiD00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 56.0 | 3.30e-01 | 96.7% | 16.6% |
| 2vkjA00 | 1.20.58.2030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 47.0 | 3.94e-01 | 78.3% | 64.2% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 53.0 | 4.02e-01 | 90.0% | 92.0% |
| 2jpfA01 | 1.20.58.960 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Protein of unknown function (DUF3120) | 0.64 | 47.0 | 4.24e-01 | 81.7% | 79.3% |
| 3i8oA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.63 | 44.0 | 3.47e-01 | 73.3% | 53.1% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 52.0 | 3.92e-01 | 91.7% | 95.1% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.62 | 51.0 | 3.83e-01 | 91.7% | 92.6% |
| 4g09A03 | 1.20.5.1300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 45.0 | 4.68e-01 | 90.0% | 90.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028436 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.77 | 44.0 | 2.83e-01 | 73.3% | 13.3% |
| 3479292 | 109.4.1.921 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140-IFT172 | 0.75 | 66.0 | 3.74e-01 | 98.3% | 10.4% |
| 3596878 | 109.40.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain | 0.69 | 53.0 | 4.13e-01 | 83.3% | 63.8% |
| 3849038 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 59.0 | 3.88e-01 | 96.7% | 55.9% |
| 3493702 | 109.4.1.1706 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GoLoco, TPR_7, TPR_8, TPR_12 | 0.68 | 59.0 | 3.57e-01 | 100.0% | 23.5% |
| 3721491 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.67 | 54.0 | 3.99e-01 | 86.7% | 68.7% |
| 3658802 | 109.46.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › TPR1-like_2nd | 0.66 | 57.0 | 4.86e-01 | 95.0% | 82.1% |
| 4012021 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 52.0 | 4.25e-01 | 95.0% | 65.3% |
| 3698119 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.54 | 49.0 | 3.88e-01 | 100.0% | 54.8% |