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MW291017.1__QPL14135.1__SEA_TURKISHDELIGHT_106__00106

Bact-Vir

MW291017.1__QPL14135.1__SEA_TURKISHDELIGHT_106__00106

Identity

Accession:
MW291017 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-154
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.73 38.0 4.38e-01 87.7% 68.5%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 34.0 4.47e-01 94.3% 92.5%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.59 38.0 3.62e-01 86.1% 57.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 40.0 3.52e-01 96.7% 48.6%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 44.0 4.41e-01 98.4% 78.3%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.04e-01 95.9% 67.4%
2b5nB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.88e-01 70.5% 51.4%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 31.0 3.39e-01 90.2% 63.6%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 33.0 3.24e-01 96.7% 52.2%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.74e-01 71.3% 31.7%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 39.0 2.75e-01 73.0% 48.0%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.55 40.0 3.50e-01 75.4% 80.2%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 39.0 3.61e-01 73.8% 89.7%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 3.53e-01 88.5% 60.3%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 32.0 2.54e-01 91.8% 28.9%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 37.0 3.51e-01 75.4% 80.0%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.26e-01 99.2% 92.1%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 34.0 3.43e-01 83.6% 67.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3425770 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 44.0 2.67e-01 73.0% 16.0%
3274691 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 44.0 2.96e-01 73.0% 32.6%
3741661 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 43.0 3.00e-01 72.1% 54.1%
3782154 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.60 41.0 2.91e-01 70.5% 32.2%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.60 45.0 4.78e-01 100.0% 88.2%
5050417 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 2.95e-01 73.0% 95.8%
4029690 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 2.44e-01 72.1% 21.3%
3249061 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 39.0 2.85e-01 70.5% 48.8%
3196432 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 39.0 2.79e-01 72.1% 40.5%
4011804 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.55 38.0 2.63e-01 70.5% 36.2%
3545742 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 39.0 2.63e-01 76.2% 53.8%
1675824 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.51 40.0 2.80e-01 84.4% 55.0%
3251263 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.50 40.0 2.81e-01 84.4% 54.9%
3939735 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 3.17e-01 99.2% 80.7%
D2 high residues 182-245
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.91e-01 85.9% 89.5%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.68e-01 85.9% 94.2%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 55.0 5.93e-01 84.4% 100.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.18e-01 92.2% 82.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.19e-01 92.2% 83.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.92e-01 95.3% 61.5%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.13e-01 82.8% 84.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 50.0 4.98e-01 84.4% 100.0%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.37e-01 90.6% 61.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 5.02e-01 85.9% 92.4%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.06e-01 95.3% 83.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 4.99e-01 90.6% 97.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.96e-01 87.5% 96.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.85e-01 92.2% 96.6%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 44.0 4.84e-01 84.4% 100.0%
2y9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 48.0 3.70e-01 90.6% 93.3%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 3.91e-01 95.3% 72.5%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.58 37.0 4.19e-01 79.7% 97.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.47e-01 95.3% 84.7%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.56 42.0 3.39e-01 81.2% 84.3%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 45.0 4.33e-01 92.2% 94.6%
4eygA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 34.0 2.49e-01 96.9% 23.2%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.41e-01 87.5% 60.9%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 40.0 3.09e-01 85.9% 36.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.75e-01 78.1% 80.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.52 38.0 3.98e-01 79.7% 98.2%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.51 42.0 2.90e-01 100.0% 59.9%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.50 39.0 3.46e-01 93.8% 99.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075805 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 60.0 6.41e-01 85.9% 81.8%
3325360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.75e-01 92.2% 75.4%
4964768 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 60.0 6.19e-01 87.5% 90.0%
4995669 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 60.0 5.66e-01 85.9% 96.0%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 53.0 4.62e-01 90.6% 52.6%
3568329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.55e-01 85.9% 88.3%
3502290 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 51.0 5.28e-01 89.1% 85.0%
3432877 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.84e-01 92.2% 95.4%
3241817 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.38e-01 89.1% 86.7%
3725283 4.1.1.146 beta barrels › SH3 › SH3 › SH3 › Ribosomal_uL24m-like 0.69 59.0 3.72e-01 93.8% 27.4%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.68 61.0 4.95e-01 100.0% 65.8%
3642679 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.68 54.0 4.59e-01 89.1% 75.0%
3799904 4.1.1.315 beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.68 57.0 3.46e-01 92.2% 17.5%
3464886 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 53.0 5.46e-01 90.6% 90.0%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.44e-01 92.2% 84.3%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.27e-01 96.9% 81.4%
3991896 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 55.0 4.87e-01 93.8% 73.7%
4493776 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 51.0 4.96e-01 84.4% 100.0%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 54.0 5.27e-01 92.2% 94.3%
3373583 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 55.0 5.37e-01 92.2% 88.6%
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.65 54.0 5.30e-01 92.2% 85.5%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 52.0 5.18e-01 87.5% 98.5%
3826751 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 56.0 5.24e-01 96.9% 78.8%
3784140 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.14e-01 82.8% 92.7%
4203006 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.64 58.0 4.80e-01 100.0% 83.6%
5031673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.29e-01 85.9% 69.5%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.94e-01 87.5% 91.4%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 49.0 5.03e-01 84.4% 100.0%
3323474 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 51.0 4.58e-01 90.6% 70.0%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.43e-01 87.5% 66.7%
3434094 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 48.0 4.29e-01 85.9% 80.0%
2106277 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.62 54.0 4.34e-01 96.9% 64.5%
3659671 4.25.1.0 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.62 51.0 4.97e-01 90.6% 87.1%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.62 46.0 4.84e-01 90.6% 96.4%
3831409 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 49.0 4.32e-01 90.6% 76.0%
3392130 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.61 48.0 4.81e-01 89.1% 84.6%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.60 46.0 4.64e-01 87.5% 90.8%
4000858 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 50.0 4.93e-01 95.3% 92.9%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.59 45.0 4.11e-01 85.9% 72.2%
3243787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 4.09e-01 85.9% 83.3%
3594081 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.07e-01 82.8% 92.5%
3168711 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.58 46.0 3.54e-01 92.2% 94.5%
3349740 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 36.0 4.11e-01 71.9% 95.6%
3917645 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.40e-01 84.4% 79.2%
3990887 375.1.1.89 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.53 36.0 3.86e-01 70.3% 81.8%
3775561 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.53 40.0 3.34e-01 85.9% 68.8%
3291157 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.52 41.0 3.20e-01 85.9% 40.7%
3700022 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 40.0 3.48e-01 85.9% 73.3%
3574933 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 39.0 3.25e-01 89.1% 68.9%
3309726 375.1.1.191 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_GRF 0.51 34.0 3.60e-01 70.3% 100.0%
4139173 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 35.0 3.16e-01 76.6% 76.0%
3212468 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.50 34.0 3.05e-01 81.2% 47.0%