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MW291017.1__QPL14140.1__SEA_TURKISHDELIGHT_111__00111

Bact-Vir

MW291017.1__QPL14140.1__SEA_TURKISHDELIGHT_111__00111

Identity

Accession:
MW291017 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dolmabahcevirus› Streptomyces_phage_TurkishDelight

TaxID: 2793708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-205
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27025.1 best DUF8336 71.5 5.30e-20 64.4% 95.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 42.0 4.36e-01 95.2% 83.0%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 40.0 4.42e-01 96.2% 94.9%
1ekzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 39.0 4.41e-01 98.1% 96.1%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 39.0 3.41e-01 75.0% 98.1%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 39.0 3.66e-01 79.8% 94.5%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.51 37.0 3.96e-01 94.2% 88.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 43.0 4.93e-01 99.0% 100.0%
3492229 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 45.0 4.66e-01 95.2% 85.3%
3502952 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.59 43.0 4.37e-01 100.0% 78.0%
3481273 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 41.0 4.17e-01 96.2% 72.4%
3865029 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.57 43.0 4.72e-01 100.0% 97.6%
4256745 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.57 43.0 3.99e-01 100.0% 63.8%
3249882 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 45.0 4.68e-01 95.2% 100.0%
4323399 101.1.9.20 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.53 34.0 3.62e-01 96.2% 73.3%
4933356 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.53 40.0 3.71e-01 80.8% 76.3%
3608101 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 43.0 4.53e-01 96.2% 100.0%
3168711 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 39.0 3.37e-01 81.7% 64.6%
4957500 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.50 31.0 3.29e-01 87.5% 68.4%
D2 medium residues 6-101
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mphA01 1.10.720.80 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.56 39.0 4.13e-01 78.1% 81.6%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 30.0 3.31e-01 100.0% 72.6%
2ifaB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.51 38.0 3.01e-01 80.2% 81.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3601415 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.60 30.0 3.35e-01 75.0% 58.7%
3488421 210.1.2.6 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B 0.55 45.0 3.23e-01 92.7% 64.5%
3889554 626.1.1.1 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 0.54 39.0 2.80e-01 76.0% 38.6%
4466220 106.1.1.7 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin 0.52 46.0 3.74e-01 100.0% 86.3%