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MW291017.1__QPL14142.1__SEA_TURKISHDELIGHT_113__00113

Bact-Vir

MW291017.1__QPL14142.1__SEA_TURKISHDELIGHT_113__00113

Identity

Accession:
MW291017 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Dolmabahcevirus› Streptomyces_phage_TurkishDelight

TaxID: 2793708

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-164
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.68 47.0 3.59e-01 70.2% 89.7%
8e9gD01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.64 54.0 3.54e-01 95.2% 83.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 47.0 4.25e-01 81.0% 88.3%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.63 46.0 4.58e-01 77.4% 88.5%
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.62 45.0 3.67e-01 77.4% 46.6%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 43.0 4.16e-01 75.0% 90.5%
3i9yA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 42.0 3.10e-01 73.8% 83.4%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 40.0 3.37e-01 70.2% 90.7%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 40.0 3.44e-01 71.4% 91.7%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 42.0 3.79e-01 75.0% 86.3%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.59 44.0 3.33e-01 83.3% 61.8%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 39.0 3.47e-01 70.2% 88.5%
8anqA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 44.0 3.33e-01 88.1% 67.9%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.53 44.0 3.41e-01 94.0% 73.9%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.51 35.0 3.57e-01 71.4% 96.3%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 36.0 3.32e-01 76.2% 57.1%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.50 35.0 3.21e-01 73.8% 59.7%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.50 36.0 3.93e-01 76.2% 100.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4267135 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.68 47.0 4.73e-01 71.4% 78.8%
3607421 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.67 56.0 3.67e-01 92.9% 90.1%
3587205 633.2.1.1 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.66 47.0 4.59e-01 73.8% 76.7%
4393454 632.15.1.6 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › DUF2678 0.65 47.0 4.44e-01 75.0% 93.0%
3605544 1189.1.1.0 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor 0.64 54.0 3.56e-01 94.0% 91.2%
5023098 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.63 44.0 3.91e-01 72.6% 79.2%
3840081 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 42.0 3.57e-01 70.2% 64.3%
4002570 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 3.39e-01 70.2% 85.6%
4982123 150.1.1.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.61 42.0 3.57e-01 70.2% 94.1%
3815191 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.61 46.0 3.80e-01 82.1% 74.1%
3259629 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 41.0 3.90e-01 72.6% 80.0%
5058368 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 40.0 3.97e-01 71.4% 87.6%
4682713 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.58 41.0 3.50e-01 73.8% 60.7%
3419202 611.9.1.0 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain 0.56 40.0 3.51e-01 76.2% 86.9%
5051162 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.56 41.0 4.12e-01 85.7% 78.8%
3279743 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.55 39.0 4.12e-01 73.8% 100.0%
4147453 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.55 38.0 3.45e-01 71.4% 97.3%
4300676 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.54 38.0 3.47e-01 73.8% 96.4%
4424300 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 39.0 2.38e-01 77.4% 16.0%
3839736 1198.1.1.0 ↗ alpha bundles › BTA121 › BTA121 › BTA121 0.52 40.0 3.45e-01 86.9% 71.8%
3467431 5069.1.1.7 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_B561 0.52 36.0 2.85e-01 73.8% 68.0%
4820880 7061.1.1.1 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.52 36.0 3.81e-01 81.0% 87.5%
4998613 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 38.0 3.66e-01 79.8% 72.0%
D2 medium residues 1-80
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00316__D10-76
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 41.0 4.89e-01 77.5% 94.4%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 42.0 4.83e-01 76.2% 94.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 40.0 4.25e-01 78.8% 73.1%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.63 43.0 3.86e-01 71.2% 89.3%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 4.07e-01 91.3% 72.6%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 42.0 4.38e-01 75.0% 80.0%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 40.0 3.81e-01 71.2% 89.7%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.57 39.0 3.39e-01 71.2% 77.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.23e-01 75.0% 84.7%
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 39.0 4.07e-01 73.8% 87.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.89e-01 72.5% 80.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.95e-01 72.5% 80.0%
1n0eA00 3.40.1550.20 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › Transcriptional regulator MraZ domain 0.55 42.0 3.49e-01 82.5% 92.2%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.43e-01 83.7% 94.3%
2i4lB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 40.0 3.69e-01 80.0% 100.0%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.64e-01 88.7% 80.0%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.37e-01 82.5% 75.2%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 46.0 3.90e-01 100.0% 93.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.90e-01 75.0% 98.3%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.39e-01 90.0% 57.4%
1twfI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.50 34.0 3.48e-01 71.2% 73.7%
1sjdB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 37.0 3.18e-01 78.8% 93.9%
4fe9A02 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.56e-01 87.5% 98.2%
4qunA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 34.0 2.46e-01 72.5% 78.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587295 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.79 54.0 5.94e-01 71.2% 100.0%
3626927 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 48.0 5.60e-01 80.0% 96.4%
3212945 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 49.0 5.67e-01 78.8% 96.6%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 42.0 5.02e-01 73.8% 87.3%
4128172 3991.1.1.2 ↗ alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C 0.70 49.0 3.78e-01 72.5% 68.6%
3938044 376.1.2.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 0.70 49.0 4.64e-01 72.5% 72.0%
136515 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 42.0 4.54e-01 80.0% 73.5%
3618716 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.67 45.0 5.03e-01 83.7% 91.7%
3604881 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.66 44.0 5.03e-01 72.5% 94.9%
3256917 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 41.0 4.25e-01 80.0% 69.3%
3620947 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 42.0 4.95e-01 80.0% 100.0%
3716804 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.63 44.0 4.33e-01 76.2% 68.2%
3937157 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.60 42.0 4.51e-01 81.2% 84.3%
3609592 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.58 40.0 4.03e-01 71.2% 75.0%
4427148 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.57 39.0 3.67e-01 71.2% 88.0%
3631382 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.53 44.0 2.92e-01 88.7% 64.1%
5040221 206.1.2.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.53 44.0 3.09e-01 97.5% 71.0%
4966947 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 41.0 2.74e-01 85.0% 91.9%
3739038 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.47e-01 96.2% 48.3%
4101533 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 41.0 2.63e-01 86.3% 42.0%
3606396 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 37.0 2.41e-01 76.2% 37.0%
3274129 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.20e-01 93.8% 54.3%
3684741 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 3.19e-01 93.8% 52.9%
3778489 708.1.2.3 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 0.51 37.0 3.28e-01 77.5% 68.3%
4358798 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 35.0 3.68e-01 85.0% 77.3%
3249604 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 3.14e-01 93.8% 50.5%
4963986 206.1.2.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.51 43.0 2.95e-01 97.5% 68.1%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 38.0 3.33e-01 90.0% 50.4%
3252840 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 3.02e-01 93.8% 44.9%