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MW291508.1__QQM14852.1__X__00028

Bact-Vir

MW291508.1__QQM14852.1__X__00028

Identity

Accession:
MW291508 ↗
Kingdom:
phage

Quality

95.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-129
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.80 73.0 6.29e-01 100.0% 75.3%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.71 62.0 5.71e-01 100.0% 75.0%
1gefA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.70 57.0 5.34e-01 100.0% 71.7%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.67 58.0 5.42e-01 100.0% 77.3%
3r3pB00 3.40.960.10 Alpha Beta › 3-Layer(aba) Sandwich › Endonuclease; Chain A › VSR Endonuclease 0.67 45.0 4.54e-01 100.0% 69.4%
3tqtB01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 54.0 5.08e-01 87.8% 75.6%
3bbdA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.65 52.0 4.13e-01 87.8% 65.7%
3lwbA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 40.0 3.90e-01 87.8% 57.3%
4esjA01 3.40.210.30 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › Dam replacing family, catalytic PD-(D/E)XK domain 0.63 51.0 4.42e-01 89.8% 69.2%
1jeyA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.62 50.0 3.99e-01 88.8% 59.1%
3o7bA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.61 49.0 3.84e-01 87.8% 75.5%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 50.0 4.58e-01 88.8% 73.8%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.60 52.0 4.49e-01 95.9% 81.9%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.60 45.0 3.65e-01 93.9% 41.8%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.60 39.0 4.57e-01 73.5% 100.0%
4bs9A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 53.0 4.18e-01 99.0% 67.3%
2mtvA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.59 47.0 4.09e-01 86.7% 89.1%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 47.0 3.56e-01 88.8% 84.7%
1w66A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 48.0 3.78e-01 89.8% 97.6%
3e5nA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 47.0 4.40e-01 89.8% 76.8%
3k3pA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 45.0 4.38e-01 86.7% 74.8%
1sqsA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 49.0 3.80e-01 99.0% 72.3%
3bm3A00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 50.0 3.72e-01 100.0% 48.6%
4r81C00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 49.0 3.95e-01 99.0% 96.4%
3ndhA00 3.40.600.30 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › 0.56 44.0 3.48e-01 85.7% 68.2%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.55e-01 99.0% 85.1%
2cxhA01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.55 45.0 3.75e-01 87.8% 76.4%
4p22A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 48.0 3.77e-01 99.0% 78.5%
3otxB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 48.0 3.53e-01 99.0% 84.9%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 48.0 3.42e-01 99.0% 83.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.55 38.0 3.04e-01 72.4% 44.2%
3e8mA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 45.0 3.85e-01 92.9% 54.9%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 47.0 3.92e-01 93.9% 58.3%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 43.0 3.65e-01 85.7% 60.5%
3ry7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 48.0 3.41e-01 99.0% 85.1%
1ce7A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 47.0 3.93e-01 93.9% 59.3%
3kbbA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.54 42.0 3.74e-01 87.8% 57.6%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 43.0 3.86e-01 89.8% 83.7%
3cz8A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 45.0 3.39e-01 91.8% 86.1%
3o83A00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 38.0 2.55e-01 75.5% 46.0%
3o8lA03 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.39e-01 88.8% 42.6%
2m71A00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.53 42.0 4.29e-01 86.7% 85.7%
2nutA03 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 46.0 3.48e-01 99.0% 97.6%
1ydmB00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.53 43.0 3.51e-01 98.0% 47.3%
2z4tA02 3.40.50.11120 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sialyltransferase, N-terminal GT-B Rossman nucleotide-binding domain 0.53 43.0 3.34e-01 88.8% 90.2%
1nbwB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.52 46.0 4.45e-01 100.0% 96.5%
1p77A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.52 46.0 4.05e-01 99.0% 83.9%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 46.0 3.27e-01 99.0% 84.6%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 41.0 3.76e-01 89.8% 92.6%
4nhxA02 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 38.0 2.91e-01 79.6% 70.6%
1to0D00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.51 43.0 3.83e-01 98.0% 93.3%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.50 42.0 4.18e-01 95.9% 95.3%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4260673 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.70 63.0 5.59e-01 100.0% 69.8%
4384457 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.70 60.0 5.43e-01 100.0% 70.8%
3839971 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.69 59.0 4.57e-01 91.8% 46.7%
4940109 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.69 59.0 5.50e-01 94.9% 74.8%
4991180 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.68 58.0 5.29e-01 100.0% 70.0%
4942264 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.68 59.0 5.49e-01 100.0% 75.2%
5066412 2008.1.1.3 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.67 57.0 5.37e-01 100.0% 76.7%
144711 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.66 55.0 4.90e-01 88.8% 70.1%
4160601 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 5.34e-01 100.0% 80.9%
5077067 2488.1.1.7 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.64 51.0 3.88e-01 86.7% 74.0%
4444461 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.64 51.0 4.06e-01 87.8% 61.5%
5026622 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.63 45.0 4.56e-01 80.6% 75.8%
4455670 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.62 49.0 4.45e-01 85.7% 64.4%
5057752 2008.1.1.141 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.62 47.0 4.66e-01 95.9% 76.2%
1167962 3351.2.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › ORF273 protein from Acidianus two-tailed virus › ORF273 protein from Acidianus two-tailed virus › ATV_ORF273 0.61 48.0 3.70e-01 85.7% 84.0%
3250314 2007.2.1.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.61 54.0 4.74e-01 99.0% 91.7%
4362740 2003.1.10.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N 0.60 49.0 4.38e-01 89.8% 66.9%
4433044 2488.1.1.7 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › EMG1 0.60 47.0 3.77e-01 88.8% 76.1%
3172489 220.1.1.91 beta barrels › PH domain-like › PH domain-like › PH domain-like › Spo7_2_N 0.59 43.0 3.12e-01 75.5% 71.1%
5025732 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.59 52.0 4.86e-01 100.0% 93.6%
1145719 2008.1.1.62 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ThaI 0.59 47.0 3.71e-01 86.7% 56.0%
3600391 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 47.0 4.39e-01 86.7% 96.8%
1503110 2008.1.1.21 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnI 0.59 50.0 4.29e-01 99.0% 70.3%
4928570 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.58 52.0 4.73e-01 100.0% 90.8%
3475000 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 52.0 3.95e-01 100.0% 90.4%
3226298 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.57 48.0 3.71e-01 91.8% 91.4%
3779736 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 51.0 3.12e-01 99.0% 37.0%
4956569 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.57 51.0 4.85e-01 100.0% 94.8%
4938185 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 50.0 4.60e-01 100.0% 93.1%
4228954 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.55 49.0 4.43e-01 100.0% 93.3%
5082893 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.55 48.0 3.41e-01 99.0% 82.5%
222168 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.55 38.0 3.04e-01 72.4% 44.2%
3876718 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.60e-01 98.0% 89.2%
4981286 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.54 48.0 4.55e-01 100.0% 92.5%
4578666 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 48.0 4.45e-01 100.0% 94.4%
3210459 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 48.0 3.98e-01 100.0% 68.9%
4122519 316.1.1.48 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MdcG 0.54 43.0 4.04e-01 88.8% 74.4%
3596952 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.54 41.0 2.94e-01 88.8% 25.9%
4936836 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 47.0 4.13e-01 100.0% 77.3%
3972957 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.53 46.0 4.24e-01 100.0% 87.4%
4666603 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 46.0 3.99e-01 100.0% 76.1%
3588817 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 46.0 4.40e-01 100.0% 88.3%
3989371 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.53 34.0 4.05e-01 75.5% 100.0%
4196168 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.52 45.0 4.36e-01 100.0% 96.5%
4963967 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.51 44.0 3.60e-01 100.0% 54.4%
3716513 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 3.23e-01 87.8% 81.0%
4451797 2007.1.4.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.51 44.0 2.83e-01 99.0% 22.0%
5032068 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.50 42.0 4.25e-01 89.8% 95.8%