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MW314850.1__QPO17095.1__SEA_LILBEANIE_17__00017
Bact-VirMW314850.1__QPO17095.1__SEA_LILBEANIE_17__00017
Identity
- Accession:
- MW314850 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stackebrandtviridae›
Lilbeanievirus›
Gordonia_phage_Lilbeanie
TaxID: 2794947
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-46
Domain cluster:
representative
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.80 | 65.0 | 4.35e-01 | 100.0% | 24.1% |
| 3laaA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.80 | 60.0 | 3.86e-01 | 86.5% | 18.3% |
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 63.0 | 5.27e-01 | 100.0% | 76.5% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.73 | 50.0 | 4.32e-01 | 73.0% | 43.5% |
| 3tiiA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.72 | 60.0 | 5.13e-01 | 100.0% | 56.9% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.72 | 60.0 | 4.52e-01 | 100.0% | 93.9% |
| 4wsfA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.72 | 51.0 | 3.62e-01 | 75.7% | 38.7% |
| 2kqaA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.70 | 59.0 | 4.17e-01 | 100.0% | 44.2% |
| 2yn5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 59.0 | 4.69e-01 | 100.0% | 51.9% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.69 | 51.0 | 4.40e-01 | 100.0% | 48.5% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 57.0 | 3.56e-01 | 100.0% | 18.0% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.69 | 49.0 | 3.73e-01 | 78.4% | 71.9% |
| 3p42A03 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.69 | 57.0 | 4.56e-01 | 94.6% | 47.3% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 55.0 | 4.96e-01 | 97.3% | 64.9% |
| 3ffjA04 | 2.60.40.4040 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 56.0 | 3.96e-01 | 100.0% | 28.3% |
| 1txkA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.69 | 57.0 | 3.30e-01 | 100.0% | 10.8% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 54.0 | 3.51e-01 | 100.0% | 19.1% |
| 2pwyA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.68 | 56.0 | 4.95e-01 | 97.3% | 100.0% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 56.0 | 4.37e-01 | 100.0% | 61.4% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 54.0 | 4.31e-01 | 100.0% | 47.1% |
| 1o54A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.67 | 57.0 | 4.67e-01 | 100.0% | 80.6% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.67 | 56.0 | 4.25e-01 | 100.0% | 54.2% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 57.0 | 4.80e-01 | 100.0% | 71.2% |
| 3thpA02 | 2.60.120.1520 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 55.0 | 3.72e-01 | 100.0% | 26.3% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.66 | 54.0 | 3.90e-01 | 100.0% | 44.2% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.65 | 55.0 | 3.79e-01 | 100.0% | 29.9% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 52.0 | 4.81e-01 | 91.9% | 91.8% |
| 3mb5A01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.64 | 52.0 | 4.59e-01 | 100.0% | 91.9% |
| 4pytA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 52.0 | 3.73e-01 | 100.0% | 32.8% |
| 3glkA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.62 | 51.0 | 4.53e-01 | 100.0% | 72.9% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.62 | 52.0 | 3.73e-01 | 100.0% | 52.5% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 50.0 | 3.32e-01 | 100.0% | 21.1% |
| 4b29A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 49.0 | 3.16e-01 | 100.0% | 17.9% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.62 | 46.0 | 4.25e-01 | 100.0% | 65.6% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 47.0 | 3.91e-01 | 100.0% | 49.4% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.61 | 49.0 | 3.62e-01 | 100.0% | 44.8% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 49.0 | 3.72e-01 | 100.0% | 57.7% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 49.0 | 3.87e-01 | 97.3% | 55.8% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.60 | 47.0 | 4.05e-01 | 100.0% | 59.7% |
| 2mctA00 | 2.60.40.4250 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 50.0 | 3.72e-01 | 100.0% | 55.9% |
| 1pqsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 45.0 | 3.84e-01 | 100.0% | 53.2% |
| 2iciA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 46.0 | 3.17e-01 | 91.9% | 75.2% |
| 3kptB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 47.0 | 3.56e-01 | 100.0% | 38.0% |
| 5hdwA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.59 | 46.0 | 3.35e-01 | 100.0% | 50.4% |
| 1lktA00 | 2.170.14.10 | Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain | 0.58 | 46.0 | 3.50e-01 | 100.0% | 40.4% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.57 | 43.0 | 3.72e-01 | 100.0% | 68.4% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.56 | 43.0 | 3.04e-01 | 94.6% | 50.7% |
| 3h8hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 41.0 | 3.42e-01 | 100.0% | 43.5% |
| 1zr6A02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.55 | 42.0 | 2.97e-01 | 89.2% | 33.3% |
| 3szpB02 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.55 | 45.0 | 2.86e-01 | 94.6% | 53.8% |
| 2vdrB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.54 | 39.0 | 2.79e-01 | 100.0% | 21.6% |
| 1w1oA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.54 | 42.0 | 3.08e-01 | 100.0% | 76.4% |
| 2lw3A00 | 2.60.40.2880 | Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain | 0.54 | 43.0 | 3.43e-01 | 100.0% | 75.6% |
| 5t17A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.54 | 44.0 | 3.51e-01 | 100.0% | 44.7% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 41.0 | 3.25e-01 | 100.0% | 81.9% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.51 | 37.0 | 2.48e-01 | 100.0% | 70.0% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 37.0 | 2.69e-01 | 100.0% | 35.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3484879 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.88 | 78.0 | 7.02e-01 | 100.0% | 78.0% |
| 3261977 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.82 | 65.0 | 4.89e-01 | 100.0% | 37.6% |
| 3941506 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.80 | 66.0 | 3.86e-01 | 100.0% | 11.6% |
| 3251163 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.78 | 59.0 | 4.45e-01 | 100.0% | 34.4% |
| 3686863 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.76 | 56.0 | 4.28e-01 | 100.0% | 34.4% |
| 4961835 | 377.9.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like | 0.75 | 62.0 | 5.12e-01 | 100.0% | 58.9% |
| 3399251 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.73 | 54.0 | 4.15e-01 | 100.0% | 34.4% |
| 3475431 | 133.1.1.0 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) | 0.71 | 61.0 | 3.71e-01 | 100.0% | 40.8% |
| 3386428 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.69 | 57.0 | 3.60e-01 | 100.0% | 18.6% |
| 153859 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.69 | 55.0 | 4.96e-01 | 97.3% | 64.9% |
| 4075554 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.69 | 57.0 | 4.11e-01 | 100.0% | 61.7% |
| 4946461 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.69 | 54.0 | 3.38e-01 | 100.0% | 15.7% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.69 | 57.0 | 4.43e-01 | 100.0% | 54.4% |
| 4082437 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.68 | 57.0 | 5.01e-01 | 94.6% | 67.3% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.68 | 53.0 | 5.04e-01 | 100.0% | 76.0% |
| 4950723 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 53.0 | 3.94e-01 | 94.6% | 64.8% |
| 4139949 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.66 | 51.0 | 5.07e-01 | 100.0% | 87.5% |
| 3805835 | 4121.1.1.2 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like | 0.65 | 56.0 | 3.39e-01 | 100.0% | 27.2% |
| 4000175 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.65 | 54.0 | 4.24e-01 | 100.0% | 50.6% |
| 3241915 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.65 | 49.0 | 2.86e-01 | 100.0% | 8.1% |
| 3226828 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.64 | 50.0 | 3.65e-01 | 100.0% | 32.8% |
| 3222026 | 10.4.1.9 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 | 0.63 | 52.0 | 3.77e-01 | 100.0% | 33.9% |
| 4958644 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 49.0 | 3.74e-01 | 91.9% | 53.7% |
| 3618723 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.62 | 49.0 | 4.05e-01 | 100.0% | 48.8% |
| 3957686 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.60 | 49.0 | 3.53e-01 | 97.3% | 31.7% |
| 4027080 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.60 | 47.0 | 3.38e-01 | 100.0% | 58.5% |
| 4588572 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 46.0 | 3.70e-01 | 86.5% | 76.0% |
| 4110075 | 1.1.2.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central+PolC_DP2_cat | 0.59 | 44.0 | 2.89e-01 | 100.0% | 16.7% |
| 3250477 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 42.0 | 3.02e-01 | 78.4% | 40.3% |
| 4930160 | 1.1.2.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › PolC_DP2_central | 0.59 | 43.0 | 3.20e-01 | 100.0% | 26.7% |
| 3930342 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.59 | 44.0 | 4.19e-01 | 100.0% | 72.7% |
| 4126406 | 2005.1.1.40 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g | 0.59 | 47.0 | 2.74e-01 | 100.0% | 27.2% |
| 3241250 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 45.0 | 3.54e-01 | 100.0% | 40.0% |
| 3949142 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 44.0 | 4.50e-01 | 89.2% | 100.0% |
| 3881492 | 109.4.1.411 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom | 0.58 | 45.0 | 2.68e-01 | 78.4% | 44.5% |
| 4359110 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 46.0 | 2.58e-01 | 100.0% | 24.8% |
| 4025385 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.57 | 43.0 | 2.98e-01 | 100.0% | 34.4% |
| 4541432 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.57 | 45.0 | 2.61e-01 | 100.0% | 33.0% |
| 4566976 | 375.14.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) | 0.56 | 48.0 | 4.73e-01 | 100.0% | 92.5% |
| 3661045 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.54 | 42.0 | 3.08e-01 | 100.0% | 32.3% |