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MW314850.1__QPO17151.1__SEA_LILBEANIE_73__00073

Bact-Vir

MW314850.1__QPO17151.1__SEA_LILBEANIE_73__00073

Identity

Accession:
MW314850 ↗
Kingdom:
phage

Quality

75.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Lilbeanievirus› Gordonia_phage_Lilbeanie

TaxID: 2794947

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-47
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaxA00 3.40.1490.10 Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 0.72 53.0 3.78e-01 78.7% 77.6%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.71 50.0 2.88e-01 72.3% 49.1%
1xw8A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.68 48.0 3.02e-01 74.5% 68.6%
4v1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.67 46.0 2.71e-01 70.2% 32.3%
5nclA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 48.0 3.09e-01 78.7% 21.7%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 47.0 3.01e-01 76.6% 61.8%
1l5aA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 45.0 2.95e-01 72.3% 62.3%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.65 55.0 3.66e-01 95.7% 75.9%
3f61A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.64 52.0 3.62e-01 95.7% 32.7%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 48.0 3.45e-01 85.1% 72.3%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.64e-01 80.9% 50.0%
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.63 47.0 4.44e-01 80.9% 73.7%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.62 43.0 3.60e-01 83.0% 43.6%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.60e-01 78.7% 56.1%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 48.0 3.06e-01 83.0% 57.1%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 46.0 3.11e-01 80.9% 45.6%
2af6A01 3.30.70.3180 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 3.36e-01 83.0% 97.7%
1uekA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.61 50.0 3.75e-01 93.6% 39.2%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 48.0 2.92e-01 85.1% 16.4%
4hzuS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.60 46.0 3.23e-01 87.2% 91.5%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.60 43.0 3.27e-01 78.7% 41.5%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 45.0 2.93e-01 80.9% 42.3%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 42.0 3.02e-01 76.6% 77.1%
6ketA01 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.57 46.0 2.78e-01 91.5% 97.7%
1afwB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 44.0 2.90e-01 85.1% 83.6%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.57 43.0 3.69e-01 78.7% 67.1%
3m0fA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 45.0 3.89e-01 91.5% 94.9%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.09e-01 83.0% 29.2%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.56 40.0 2.75e-01 89.4% 21.5%
4dsfA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 41.0 3.19e-01 76.6% 70.0%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.70e-01 85.1% 58.9%
2fvgA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 42.0 2.76e-01 89.4% 35.7%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.38e-01 91.5% 52.2%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 40.0 3.13e-01 78.7% 69.4%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.55 46.0 2.82e-01 93.6% 95.7%
4mzyA01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.54 42.0 2.54e-01 83.0% 49.1%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 39.0 3.18e-01 80.9% 94.0%
2fhfA04 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 2.64e-01 97.9% 67.2%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 35.0 3.44e-01 80.9% 55.8%
4x0qA04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.54 47.0 3.29e-01 95.7% 70.1%
3nznA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.35e-01 93.6% 90.3%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.51 37.0 3.54e-01 76.6% 78.2%
3c6fA01 3.30.240.20 Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains 0.51 39.0 3.61e-01 89.4% 64.5%
3zs6A02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 36.0 2.74e-01 78.7% 85.2%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 4.49e-01 80.9% 51.2%
3202208 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.69 48.0 3.27e-01 72.3% 92.0%
4030386 206.1.3.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP 0.69 50.0 2.89e-01 78.7% 44.1%
4363280 601.1.2.53 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DGKD_4H 0.68 56.0 3.95e-01 95.7% 58.1%
3679669 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.66 48.0 3.60e-01 76.6% 76.4%
3735563 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.66 47.0 3.27e-01 76.6% 54.7%
3526831 558.1.1.21 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N 0.65 44.0 3.67e-01 70.2% 47.5%
3207611 109.4.1.1587 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N, MOR2-PAG1_mid 0.65 47.0 2.57e-01 76.6% 6.3%
7688 808.1.1.2 ↗ a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arteri_nucleo 0.63 47.0 4.44e-01 80.9% 73.7%
2329917 2011.1.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.62 42.0 3.93e-01 80.9% 53.1%
3722609 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.62 51.0 3.00e-01 93.6% 50.5%
3937537 3755.3.1.462 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Pinin_SDK_memA 0.62 46.0 2.91e-01 78.7% 36.0%
3647744 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.62 45.0 3.25e-01 76.6% 47.2%
4315437 2484.1.1.97 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC 0.62 47.0 2.87e-01 83.0% 28.7%
4360328 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.62 47.0 3.09e-01 80.9% 71.4%
3587173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.94e-01 89.4% 62.1%
4005987 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 46.0 3.28e-01 78.7% 86.4%
3932044 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.60 41.0 3.27e-01 70.2% 43.3%
3788734 1117.1.1.1 ↗ alpha arrays › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › EPL1 0.60 52.0 3.32e-01 95.7% 36.4%
3711022 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.60 47.0 2.80e-01 87.2% 48.5%
10173 2011.1.1.11 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M42 0.60 40.0 3.81e-01 87.2% 54.7%
3288775 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.60 48.0 3.18e-01 89.4% 70.8%
4084031 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.59 43.0 2.80e-01 78.7% 28.2%
4956363 205.1.1.22 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_21 0.59 36.0 3.18e-01 85.1% 38.4%
3971074 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 43.0 2.78e-01 78.7% 19.6%
4277444 2484.1.1.97 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC 0.59 46.0 2.80e-01 85.1% 24.2%
4012100 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.60e-01 100.0% 37.9%
3553587 558.1.1.21 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › BRWD1_N 0.58 40.0 3.10e-01 74.5% 45.2%
4368951 387.1.5.4 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin_2 0.58 35.0 4.04e-01 83.0% 87.9%
174910 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.58 41.0 3.76e-01 80.9% 58.0%
3924514 109.4.1.83 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.58 45.0 2.82e-01 87.2% 17.6%
3583595 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 38.0 3.66e-01 72.3% 63.3%
3390936 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.57 41.0 3.47e-01 87.2% 44.0%
3506709 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.57 49.0 3.81e-01 100.0% 45.5%
3481115 261.1.1.0 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.57 48.0 2.80e-01 93.6% 54.6%
319515 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.56 41.0 3.31e-01 85.1% 36.7%
3952539 7581.1.1.1 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N 0.56 39.0 2.43e-01 74.5% 74.7%
4017033 387.1.5.4 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin_2 0.56 34.0 4.11e-01 70.2% 96.7%
3812358 387.1.5.29 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29719 0.56 36.0 3.86e-01 85.1% 79.5%
3370099 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.56 44.0 3.32e-01 89.4% 96.8%
3255069 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.56 44.0 2.98e-01 91.5% 90.2%
4941096 205.1.1.1 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.55 39.0 3.38e-01 87.2% 46.7%
1916673 3758.1.1.2 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › HlyE 0.55 46.0 2.82e-01 93.6% 95.7%
3993461 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.54 48.0 2.80e-01 97.9% 54.3%
3976102 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.54 40.0 3.39e-01 87.2% 70.0%
3348286 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.53 43.0 3.07e-01 91.5% 90.7%
3657579 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.53 47.0 4.15e-01 100.0% 70.0%
3989044 101.36.1.1 ↗ alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 0.53 38.0 3.73e-01 87.2% 69.1%
5021646 205.1.1.131 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_9 0.52 33.0 3.05e-01 78.7% 42.9%
4027126 1017.1.1.0 ↗ a+b two layers › Rrs1 › Rrs1 › Rrs1 0.52 33.0 3.02e-01 76.6% 44.3%
3238932 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.51 39.0 2.59e-01 93.6% 23.2%
5018929 3703.1.1.0 ↗ a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.50 39.0 2.89e-01 85.1% 59.2%