←Back to structures
MW314856.1__QPO17698.1__PHIGD22-1_91__00091
Bact-VirMW314856.1__QPO17698.1__PHIGD22-1_91__00091
Identity
- Accession:
- MW314856 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-55
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 72.0 | 6.84e-01 | 100.0% | 83.9% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 69.0 | 5.71e-01 | 100.0% | 57.6% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 61.0 | 5.76e-01 | 100.0% | 73.8% |
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.69 | 50.0 | 4.98e-01 | 81.5% | 75.0% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 54.0 | 5.20e-01 | 100.0% | 77.4% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 57.0 | 5.24e-01 | 100.0% | 79.5% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 47.0 | 4.27e-01 | 81.5% | 55.4% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 4.63e-01 | 100.0% | 79.3% |
| 2m2lA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 45.0 | 4.29e-01 | 83.3% | 68.7% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 48.0 | 4.87e-01 | 94.4% | 94.2% |
| 2qggA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.59 | 50.0 | 4.43e-01 | 100.0% | 74.7% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 45.0 | 4.53e-01 | 94.4% | 85.7% |
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 46.0 | 4.44e-01 | 94.4% | 76.6% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 43.0 | 3.65e-01 | 83.3% | 76.2% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 45.0 | 4.64e-01 | 92.6% | 94.1% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 48.0 | 3.81e-01 | 96.3% | 77.7% |
| 2x7fC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 44.0 | 3.76e-01 | 85.2% | 92.6% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.29e-01 | 75.9% | 94.2% |
| 3d7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 41.0 | 3.68e-01 | 83.3% | 95.1% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 3.58e-01 | 92.6% | 76.3% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.55 | 43.0 | 4.40e-01 | 94.4% | 96.2% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.54 | 42.0 | 4.30e-01 | 94.4% | 96.1% |
| 1tu5A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.37e-01 | 94.4% | 66.1% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 44.0 | 3.67e-01 | 100.0% | 90.2% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 41.0 | 3.30e-01 | 94.4% | 79.5% |
| 1u4dA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 38.0 | 3.48e-01 | 85.2% | 92.8% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.17e-01 | 92.6% | 79.3% |
| 2db5A00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 40.0 | 3.19e-01 | 90.7% | 56.2% |
| 1quqB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 3.34e-01 | 96.3% | 65.8% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.05e-01 | 100.0% | 78.7% |
| 2kqfA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 38.0 | 3.29e-01 | 88.9% | 81.2% |
| 2d5mA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 40.0 | 2.96e-01 | 100.0% | 78.7% |
| 5escA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 41.0 | 3.19e-01 | 100.0% | 41.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025829 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 65.0 | 6.53e-01 | 100.0% | 85.5% |
| 3741680 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 65.0 | 6.53e-01 | 100.0% | 87.3% |
| 3974490 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 73.0 | 6.36e-01 | 100.0% | 70.0% |
| 3488114 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 66.0 | 5.07e-01 | 100.0% | 40.8% |
| 3491615 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.78 | 65.0 | 4.21e-01 | 100.0% | 20.4% |
| 3495447 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.78 | 65.0 | 5.06e-01 | 100.0% | 42.5% |
| 3886139 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.77 | 67.0 | 6.30e-01 | 100.0% | 80.0% |
| 3399422 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.76 | 60.0 | 5.02e-01 | 100.0% | 50.5% |
| 4049824 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 59.0 | 4.64e-01 | 100.0% | 41.7% |
| 3373298 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 63.0 | 4.08e-01 | 100.0% | 23.3% |
| 4114383 | 4.8.1.47 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 | 0.71 | 61.0 | 5.30e-01 | 100.0% | 90.6% |
| 3706730 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 62.0 | 5.42e-01 | 100.0% | 93.8% |
| 5080798 | 4.17.1.0 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like | 0.69 | 58.0 | 5.35e-01 | 100.0% | 81.3% |
| 4929262 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.68 | 58.0 | 4.25e-01 | 100.0% | 36.8% |
| 3490245 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 4.93e-01 | 100.0% | 74.4% |
| 3769507 | 4.1.1.31 ↗ | beta barrels › SH3 › SH3 › SH3 › Spin-Ssty | 0.66 | 51.0 | 4.80e-01 | 100.0% | 68.6% |
| 5034832 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 5.17e-01 | 100.0% | 87.1% |
| 3758536 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 52.0 | 4.83e-01 | 100.0% | 75.7% |
| 3979842 | 4.1.1.45 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF903 | 0.59 | 45.0 | 4.49e-01 | 100.0% | 87.3% |
| 3680900 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.58 | 48.0 | 3.86e-01 | 100.0% | 69.2% |
| 1279189 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.57 | 44.0 | 4.47e-01 | 94.4% | 87.3% |
| 3689627 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 46.0 | 2.88e-01 | 96.3% | 31.2% |
| 3839465 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 44.0 | 2.91e-01 | 92.6% | 18.5% |
| 4039507 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.56 | 43.0 | 4.34e-01 | 94.4% | 89.1% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.56 | 45.0 | 4.19e-01 | 94.4% | 97.1% |
| 3620222 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 49.0 | 3.81e-01 | 100.0% | 72.5% |
| 3411213 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 44.0 | 3.43e-01 | 98.1% | 54.3% |
| 3278636 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.54 | 43.0 | 3.19e-01 | 92.6% | 76.1% |
| 4135259 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 43.0 | 4.19e-01 | 98.1% | 81.5% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.53 | 42.0 | 4.10e-01 | 100.0% | 81.5% |
| 5032977 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 44.0 | 3.97e-01 | 100.0% | 75.0% |
| 4001749 | 206.1.3.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH_synth_ATP | 0.53 | 42.0 | 3.06e-01 | 92.6% | 30.5% |
| 3445964 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 43.0 | 2.82e-01 | 96.3% | 24.2% |
| 4991926 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.52 | 43.0 | 2.86e-01 | 100.0% | 20.8% |
| 3476921 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.52 | 34.0 | 2.90e-01 | 70.4% | 61.0% |
| 3530616 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.51 | 40.0 | 3.24e-01 | 90.7% | 61.4% |
| 3887288 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.50 | 38.0 | 3.26e-01 | 88.9% | 71.0% |
| 3928589 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.50 | 39.0 | 3.17e-01 | 90.7% | 60.0% |
| 4318524 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.50 | 39.0 | 3.01e-01 | 100.0% | 78.2% |