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MW314859.1__QPO17896.1__PHIGD17-1_11__00011
Bact-VirMW314859.1__QPO17896.1__PHIGD17-1_11__00011
Identity
- Accession:
- MW314859 ↗
- Kingdom:
- phage
Quality
91.3
mean pLDDT
Cluster
View cluster (17 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-97
Domain cluster:
rep: OR159649.1__WKW84805.1__SEA_JAMZY_14__00014__D8-88
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.77 | 51.0 | 4.44e-01 | 86.1% | 46.5% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.72 | 66.0 | 6.11e-01 | 100.0% | 79.0% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.70 | 50.0 | 4.79e-01 | 100.0% | 65.6% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 50.0 | 4.94e-01 | 97.5% | 78.8% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 57.0 | 4.73e-01 | 100.0% | 64.3% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.64 | 54.0 | 4.88e-01 | 96.2% | 69.4% |
| 2v4jB03 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 40.0 | 4.34e-01 | 89.9% | 78.5% |
| 4ctaA02 | 3.30.70.2860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 42.0 | 4.37e-01 | 92.4% | 73.3% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 3.09e-01 | 75.9% | 40.9% |
| 1htwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 46.0 | 3.77e-01 | 87.3% | 94.9% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 39.0 | 3.89e-01 | 100.0% | 64.3% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.59 | 51.0 | 3.34e-01 | 100.0% | 59.3% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.59 | 40.0 | 3.98e-01 | 92.4% | 68.3% |
| 1ti2B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 47.0 | 4.02e-01 | 91.1% | 60.9% |
| 1xkpB00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.58 | 43.0 | 3.81e-01 | 98.7% | 52.9% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.58 | 48.0 | 3.96e-01 | 91.1% | 95.1% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.57 | 41.0 | 3.85e-01 | 92.4% | 59.8% |
| 4c8yA01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 4.21e-01 | 97.5% | 67.6% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 4.17e-01 | 96.2% | 69.3% |
| 1itpA00 | 3.30.70.80 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 | 0.56 | 32.0 | 3.26e-01 | 100.0% | 54.5% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.55 | 42.0 | 3.52e-01 | 96.2% | 45.8% |
| 1k8kA04 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 44.0 | 4.16e-01 | 86.1% | 92.4% |
| 3d9xA01 | 6.20.50.100 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.54 | 27.0 | 3.20e-01 | 77.2% | 66.0% |
| 2memA00 | 3.90.1150.190 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain | 0.54 | 46.0 | 4.10e-01 | 98.7% | 99.2% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.54 | 47.0 | 2.89e-01 | 100.0% | 22.9% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 39.0 | 2.90e-01 | 79.7% | 100.0% |
| 5tkwA01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 37.0 | 2.97e-01 | 73.4% | 87.6% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 41.0 | 2.75e-01 | 89.9% | 97.8% |
| 3u02A02 | 3.90.600.20 | Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › | 0.53 | 41.0 | 3.89e-01 | 96.2% | 70.5% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.53 | 39.0 | 3.68e-01 | 92.4% | 65.3% |
| 1tuwA00 | 3.30.70.1090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. | 0.52 | 41.0 | 3.80e-01 | 94.9% | 66.0% |
| 1z1yA01 | 2.90.20.10 | Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain | 0.52 | 34.0 | 2.70e-01 | 94.9% | 31.2% |
| 1hfeL03 | 3.40.950.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 › Fe-only Hydrogenase (Larger Subunit); Chain L, domain 3 | 0.51 | 41.0 | 3.44e-01 | 89.9% | 55.2% |
| 2uv8A05 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 2.35e-01 | 84.8% | 27.6% |
| 1imuA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.50 | 39.0 | 3.55e-01 | 83.5% | 71.0% |
| 4fo0A03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.50 | 45.0 | 3.59e-01 | 97.5% | 94.1% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 43.0 | 3.35e-01 | 93.7% | 70.8% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 43.0 | 3.21e-01 | 92.4% | 47.9% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4791706 | 304.126.1.4 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I_N | 0.72 | 46.0 | 4.76e-01 | 96.2% | 68.9% |
| 4262988 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.67 | 45.0 | 4.46e-01 | 97.5% | 64.7% |
| 4033409 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.67 | 58.0 | 4.50e-01 | 100.0% | 42.7% |
| 5074130 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.65 | 48.0 | 3.37e-01 | 78.5% | 43.5% |
| 4502232 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.65 | 50.0 | 5.04e-01 | 91.1% | 82.5% |
| 4384627 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.65 | 49.0 | 3.55e-01 | 82.3% | 94.0% |
| 3589873 | 3067.1.1.1 ↗ | few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N | 0.64 | 42.0 | 3.98e-01 | 79.7% | 56.8% |
| 4599652 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.64 | 44.0 | 4.45e-01 | 97.5% | 72.5% |
| 4954522 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.63 | 54.0 | 5.19e-01 | 97.5% | 86.2% |
| 3694899 | 5069.1.1.71 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF3176 | 0.63 | 51.0 | 3.86e-01 | 89.9% | 68.5% |
| 3281159 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.63 | 37.0 | 2.98e-01 | 78.5% | 27.9% |
| 3573006 | 327.11.2.54 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_5 | 0.63 | 47.0 | 4.80e-01 | 92.4% | 85.3% |
| 4129360 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.63 | 43.0 | 4.42e-01 | 97.5% | 76.0% |
| 3521006 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.62 | 54.0 | 3.97e-01 | 96.2% | 95.7% |
| 3987356 | 3067.1.1.1 ↗ | few secondary structure elements › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › N-terminal domain of helicase-loading protein DnaI › DnaI_N | 0.62 | 42.0 | 4.12e-01 | 79.7% | 64.7% |
| 5005033 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.62 | 45.0 | 4.49e-01 | 96.2% | 76.2% |
| 5024285 | 3501.1.1.2 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 | 0.62 | 42.0 | 4.44e-01 | 96.2% | 84.6% |
| 4679312 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.62 | 44.0 | 4.46e-01 | 97.5% | 75.0% |
| 3260140 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.62 | 50.0 | 4.37e-01 | 100.0% | 57.6% |
| 4943420 | 3501.1.1.2 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 | 0.61 | 39.0 | 4.06e-01 | 100.0% | 71.4% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.61 | 51.0 | 5.12e-01 | 93.7% | 93.7% |
| 4933299 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.61 | 46.0 | 4.60e-01 | 92.4% | 78.3% |
| 3965604 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.61 | 53.0 | 4.73e-01 | 100.0% | 71.3% |
| 3486254 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.61 | 45.0 | 4.50e-01 | 92.4% | 78.8% |
| 4033119 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.60 | 34.0 | 3.21e-01 | 72.2% | 43.0% |
| 4564327 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.60 | 51.0 | 5.08e-01 | 97.5% | 92.8% |
| 5023832 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.59 | 46.0 | 4.71e-01 | 89.9% | 90.7% |
| 3481511 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 41.0 | 4.25e-01 | 98.7% | 77.3% |
| 3675128 | 304.9.1.20 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_8 | 0.59 | 41.0 | 4.30e-01 | 93.7% | 82.9% |
| 3925581 | 327.6.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like | 0.58 | 45.0 | 4.69e-01 | 88.6% | 95.7% |
| 5075945 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 42.0 | 4.39e-01 | 98.7% | 85.7% |
| 5060556 | 3016.1.1.5 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SHMT | 0.57 | 41.0 | 3.25e-01 | 97.5% | 35.3% |
| 5051882 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.57 | 34.0 | 3.04e-01 | 74.7% | 40.9% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.57 | 51.0 | 3.50e-01 | 100.0% | 49.3% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.57 | 37.0 | 3.03e-01 | 89.9% | 33.5% |
| 5035779 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 49.0 | 4.31e-01 | 98.7% | 90.8% |
| 4969505 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.56 | 46.0 | 4.22e-01 | 100.0% | 67.3% |
| 3653902 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 48.0 | 3.53e-01 | 98.7% | 48.4% |
| 3256918 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.54 | 47.0 | 2.83e-01 | 93.7% | 71.7% |
| 5072765 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.54 | 43.0 | 3.11e-01 | 89.9% | 83.5% |
| 2443924 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.54 | 44.0 | 4.10e-01 | 96.2% | 75.5% |
| 4964341 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.54 | 37.0 | 3.49e-01 | 82.3% | 57.6% |
| 3711985 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.53 | 43.0 | 3.08e-01 | 89.9% | 31.2% |
| 3935808 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.53 | 37.0 | 2.87e-01 | 74.7% | 93.2% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 48.0 | 3.42e-01 | 100.0% | 48.9% |
| 4054258 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.53 | 36.0 | 3.07e-01 | 73.4% | 95.7% |
| 3969345 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 43.0 | 3.30e-01 | 98.7% | 82.7% |
| 4955870 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 42.0 | 3.24e-01 | 88.6% | 54.4% |
| 4037650 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.52 | 45.0 | 2.62e-01 | 94.9% | 19.6% |
| 3736646 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 40.0 | 2.58e-01 | 86.1% | 86.2% |
| 3480000 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.50 | 44.0 | 3.03e-01 | 100.0% | 53.6% |
| 4939612 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.50 | 41.0 | 3.79e-01 | 100.0% | 67.8% |