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MW314859.1__QPO17941.1__PHIGD17-1_58__00058

Bact-Vir

MW314859.1__QPO17941.1__PHIGD17-1_58__00058

Identity

Accession:
MW314859 ↗
Kingdom:
phage

Quality

84.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mycobacterium_phage_phiGD17-1

TaxID: 2794950

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-62
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.72 57.0 4.43e-01 86.2% 52.8%
1wc1C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.72 56.0 3.90e-01 86.2% 50.5%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 56.0 4.53e-01 86.2% 46.8%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.70 51.0 5.14e-01 86.2% 80.7%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 57.0 4.43e-01 100.0% 42.6%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 52.0 3.31e-01 79.3% 19.2%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 55.0 4.73e-01 89.7% 60.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 53.0 4.20e-01 89.7% 42.1%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 46.0 3.35e-01 75.9% 79.7%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.65 50.0 3.39e-01 84.5% 22.3%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.65 45.0 2.80e-01 89.7% 13.3%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.65 58.0 4.70e-01 100.0% 57.9%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.63 49.0 4.34e-01 86.2% 59.1%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 43.0 2.67e-01 84.5% 11.9%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.63 52.0 3.86e-01 91.4% 47.6%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.63 45.0 3.66e-01 79.3% 50.0%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 50.0 4.44e-01 87.9% 63.9%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.62 53.0 4.58e-01 100.0% 61.1%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 50.0 3.61e-01 87.9% 34.4%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 46.0 3.74e-01 81.0% 44.4%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 46.0 3.99e-01 84.5% 64.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.26e-01 79.3% 75.0%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 3.23e-01 72.4% 73.9%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 43.0 3.63e-01 79.3% 60.6%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 3.71e-01 82.8% 61.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 47.0 3.94e-01 91.4% 62.4%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.59 40.0 3.65e-01 86.2% 50.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 41.0 2.98e-01 75.9% 54.7%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.58 46.0 3.66e-01 86.2% 46.6%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 39.0 2.44e-01 84.5% 11.7%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 39.0 2.61e-01 86.2% 15.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 40.0 2.58e-01 84.5% 14.1%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.30e-01 91.4% 41.7%
2cntA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 42.0 3.08e-01 79.3% 50.3%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 40.0 3.46e-01 79.3% 69.0%
2fiaB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.00e-01 79.3% 56.0%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 41.0 2.76e-01 81.0% 45.1%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 41.0 2.65e-01 86.2% 15.9%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 44.0 3.55e-01 96.6% 43.2%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 35.0 3.53e-01 75.9% 63.9%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 2.70e-01 84.5% 18.2%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.54 37.0 2.78e-01 74.1% 43.8%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 43.0 3.54e-01 94.8% 49.2%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 36.0 3.25e-01 74.1% 47.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 45.0 3.27e-01 98.3% 53.6%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.13e-01 77.6% 55.3%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.85e-01 81.0% 89.7%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.86e-01 72.4% 40.8%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.51 36.0 3.51e-01 77.6% 71.2%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.30e-01 93.1% 52.7%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.81e-01 82.8% 33.5%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 41.0 2.89e-01 91.4% 63.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4440404 4325.1.1.15 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 0.85 68.0 5.22e-01 84.5% 43.3%
3671921 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.77 58.0 6.03e-01 82.8% 83.6%
5018724 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.76 63.0 5.34e-01 94.8% 55.8%
4927872 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.74 66.0 5.20e-01 100.0% 60.0%
4617128 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.73 66.0 5.20e-01 100.0% 63.5%
3178444 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.72 64.0 4.72e-01 100.0% 40.0%
5073431 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.71 58.0 3.38e-01 89.7% 42.1%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 63.0 4.68e-01 100.0% 41.4%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 60.0 4.86e-01 100.0% 50.9%
3533362 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.70 61.0 4.37e-01 100.0% 33.9%
4012540 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.68 56.0 5.16e-01 91.4% 69.3%
3456246 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.67 52.0 4.47e-01 82.8% 71.1%
3663237 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 52.0 4.64e-01 82.8% 76.2%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 57.0 5.05e-01 96.6% 68.2%
3304389 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 3.40e-01 89.7% 48.9%
2643433 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.65 45.0 2.76e-01 89.7% 12.1%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 53.0 4.48e-01 93.1% 54.0%
3925367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 53.0 3.89e-01 96.6% 35.3%
3327101 295.1.1.1 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.63 56.0 4.95e-01 94.8% 77.5%
3660366 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.63 57.0 3.55e-01 100.0% 82.3%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 48.0 3.92e-01 87.9% 43.6%
3933098 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 47.0 4.61e-01 84.5% 73.8%
3925738 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 47.0 3.90e-01 87.9% 43.6%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.63 46.0 3.73e-01 82.8% 40.9%
5059237 3457.1.1.3 ↗ alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.63 53.0 3.28e-01 98.3% 35.4%
3711985 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.62 54.0 3.49e-01 94.8% 74.8%
3740262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.20e-01 100.0% 55.4%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 50.0 4.61e-01 87.9% 72.0%
3480250 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 48.0 4.13e-01 82.8% 54.4%
4303957 2006.1.6.15 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.62 51.0 3.69e-01 98.3% 33.5%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 50.0 4.58e-01 87.9% 72.0%
5001238 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 48.0 3.92e-01 89.7% 45.5%
3929366 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.61 49.0 4.01e-01 96.6% 47.6%
4026643 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 47.0 4.20e-01 86.2% 61.2%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 56.0 4.33e-01 100.0% 48.3%
3197800 221.13.1.2 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › RRG1_C 0.61 55.0 3.90e-01 100.0% 77.0%
3838659 5085.1.1.0 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.60 55.0 3.28e-01 100.0% 66.8%
3172926 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.60 50.0 3.16e-01 96.6% 34.4%
3958788 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 3.83e-01 86.2% 46.4%
4216680 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 46.0 3.98e-01 86.2% 62.4%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 49.0 3.78e-01 94.8% 40.0%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 45.0 4.64e-01 84.5% 92.7%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.59e-01 81.0% 47.8%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 3.98e-01 89.7% 53.3%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.58 47.0 3.49e-01 89.7% 46.5%
5044375 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.57 53.0 3.44e-01 100.0% 26.4%
3979711 252.2.1.6 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.57 44.0 4.32e-01 89.7% 80.0%
4609498 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 43.0 4.01e-01 87.9% 71.2%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.56 39.0 3.32e-01 79.3% 41.9%
5061930 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.77e-01 86.2% 52.6%
3986515 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.54 41.0 2.70e-01 81.0% 42.6%
None — 0.54 43.0 3.12e-01 89.7% 68.2%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 47.0 3.31e-01 100.0% 55.1%
3480321 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 47.0 4.23e-01 96.6% 97.4%
5045235 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.42e-01 96.6% 76.2%
3608772 2004.1.1.427 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N 0.52 45.0 2.68e-01 94.8% 78.6%
4416983 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.52 43.0 3.62e-01 96.6% 88.2%
4928056 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.98e-01 77.6% 92.0%
3702572 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 44.0 2.72e-01 96.6% 73.7%
5068824 213.1.1.31 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.51 40.0 3.16e-01 84.5% 67.0%
D2 medium residues 63-134
PDB
Domain cluster: rep: IMGVR_UViG_3300005423_000148-3300005423-Ga0066828_100047336__D75-137
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.71 52.0 4.97e-01 98.6% 67.5%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.50 43.0 3.86e-01 100.0% 67.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.93 61.0 6.00e-01 98.6% 64.0%
4303143 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.77 46.0 4.37e-01 100.0% 50.6%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.68 52.0 4.19e-01 97.2% 43.3%
3764524 632.6.1.7 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › RH_dom 0.62 44.0 4.02e-01 98.6% 55.8%
3887261 376.1.3.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.62 44.0 3.93e-01 98.6% 53.0%
3885923 4309.1.1.1 ↗ a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP 0.58 46.0 3.76e-01 86.1% 71.9%
3599724 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.56 39.0 3.21e-01 75.0% 37.2%
5071329 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.53 42.0 4.02e-01 100.0% 75.3%
5080529 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.50 30.0 2.79e-01 76.4% 44.2%
3166072 7587.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Inositol_P 0.50 41.0 3.54e-01 94.4% 90.0%