←Back to structures

MW316731.1__QVG63897.1__Mithridates_00010__00010

Bact-Vir

MW316731.1__QVG63897.1__Mithridates_00010__00010

Identity

Accession:
MW316731 ↗
Kingdom:
phage

Quality

92.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_Mithridates

TaxID: 2801403

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: rep: OL960030.2__UJE34782.1__vBAbaPP1_163__00163__D3-54
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 56.0 4.35e-01 100.0% 69.8%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 50.0 3.90e-01 86.5% 72.2%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 49.0 3.80e-01 88.5% 84.2%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.01e-01 100.0% 66.7%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 46.0 3.60e-01 82.7% 83.9%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 46.0 3.49e-01 100.0% 32.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 51.0 3.61e-01 100.0% 46.7%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 43.0 3.43e-01 100.0% 38.7%
2vzwB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 49.0 3.60e-01 98.1% 61.7%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 4.06e-01 100.0% 81.4%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.57 44.0 4.23e-01 100.0% 76.2%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 48.0 3.57e-01 96.2% 57.8%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 45.0 3.61e-01 88.5% 82.9%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.56 45.0 4.04e-01 100.0% 92.9%
3bs9A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 46.0 4.12e-01 100.0% 98.7%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 43.0 3.20e-01 88.5% 68.5%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 3.22e-01 100.0% 32.6%
2cpiA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 44.0 3.92e-01 94.2% 100.0%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 43.0 3.37e-01 100.0% 38.2%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.40e-01 86.5% 70.5%
1p7hL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 3.78e-01 100.0% 52.3%
5mmjv00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 45.0 4.00e-01 98.1% 96.2%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.22e-01 100.0% 75.8%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 45.0 3.34e-01 94.2% 57.5%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.54 49.0 3.54e-01 100.0% 41.4%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.44e-01 98.1% 57.4%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 42.0 3.21e-01 100.0% 32.9%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.77e-01 100.0% 70.1%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.86e-01 98.1% 71.6%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.45e-01 100.0% 46.1%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 45.0 3.39e-01 96.2% 77.4%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.22e-01 92.3% 69.9%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 44.0 3.55e-01 100.0% 45.0%
2mzsA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 43.0 3.65e-01 100.0% 77.8%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.19e-01 100.0% 45.2%
4dbrA02 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 45.0 2.91e-01 100.0% 67.8%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 43.0 3.71e-01 100.0% 83.9%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.56e-01 100.0% 52.9%
2m2kA00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.52 45.0 3.40e-01 100.0% 48.1%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.52 38.0 3.28e-01 100.0% 45.5%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 41.0 3.07e-01 86.5% 32.0%
7wezA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 43.0 3.85e-01 94.2% 100.0%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 42.0 3.61e-01 100.0% 83.0%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 37.0 2.68e-01 78.8% 29.5%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.31e-01 100.0% 45.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 42.0 3.42e-01 100.0% 47.9%
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 41.0 3.79e-01 96.2% 100.0%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.51 40.0 2.94e-01 94.2% 55.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.51 42.0 3.08e-01 100.0% 64.5%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.51 41.0 3.77e-01 100.0% 100.0%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 37.0 3.01e-01 90.4% 36.2%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 40.0 3.46e-01 100.0% 84.7%
2dhgA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 40.0 3.68e-01 100.0% 98.7%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952123 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.76 55.0 5.30e-01 100.0% 68.3%
3991219 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 51.0 3.97e-01 88.5% 84.3%
4236834 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.63 50.0 4.33e-01 90.4% 87.1%
4998579 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 3.62e-01 98.1% 48.2%
3400015 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.62 46.0 3.52e-01 82.7% 78.5%
4311623 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.61 49.0 3.85e-01 100.0% 65.2%
4280109 2492.1.1.9 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC 0.60 48.0 3.88e-01 100.0% 70.4%
4466175 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.60 52.0 3.64e-01 98.1% 56.5%
5041452 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.60 48.0 3.52e-01 92.3% 60.8%
4028321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 3.27e-01 88.5% 61.6%
139190 10.12.1.42 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DUF1971 0.58 43.0 3.54e-01 100.0% 43.2%
5050550 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 50.0 3.86e-01 100.0% 43.3%
3948638 223.8.1.4 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.57 46.0 3.32e-01 92.3% 38.7%
3289252 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 48.0 3.45e-01 98.1% 62.5%
4549660 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.56 52.0 4.42e-01 100.0% 76.2%
4010374 223.1.1.156 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.56 46.0 3.57e-01 92.3% 51.7%
3219058 10.4.1.39 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_M02D8_5_4th 0.56 42.0 3.10e-01 96.2% 32.8%
3167876 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.56 47.0 3.35e-01 98.1% 66.3%
4006675 11.1.1.156 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 0.56 42.0 3.49e-01 98.1% 46.7%
3593295 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.46e-01 86.5% 86.4%
3488745 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.56 46.0 3.74e-01 100.0% 58.2%
4998374 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.37e-01 88.5% 80.0%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 46.0 3.74e-01 94.2% 66.0%
3967921 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.55 47.0 4.05e-01 94.2% 70.0%
5001318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.51e-01 92.3% 60.9%
4579401 329.1.1.1 ↗ a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD 0.55 43.0 3.27e-01 90.4% 53.6%
3753029 221.15.1.0 ↗ a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.55 37.0 4.10e-01 80.8% 92.5%
5041016 10.1.2.181 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 0.54 48.0 3.34e-01 100.0% 30.9%
3385499 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.54 48.0 3.95e-01 100.0% 67.4%
3989895 10.32.1.86 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C_2 0.54 44.0 3.12e-01 100.0% 30.7%
4289847 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.54 48.0 3.92e-01 100.0% 66.3%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.36e-01 94.2% 56.9%
3942062 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 47.0 3.42e-01 100.0% 65.3%
3740347 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.53 45.0 3.26e-01 100.0% 77.6%
4263644 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 43.0 3.14e-01 94.2% 43.9%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.53 44.0 3.18e-01 98.1% 47.5%
3167305 223.2.1.13 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRX 0.52 42.0 3.05e-01 86.5% 28.5%
3388184 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 39.0 3.27e-01 100.0% 44.9%
1393818 272.1.1.1 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_C 0.52 45.0 3.66e-01 100.0% 61.8%
4204289 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.52 42.0 3.09e-01 94.2% 46.0%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.51 39.0 3.88e-01 100.0% 90.9%
5064594 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 46.0 3.24e-01 100.0% 33.5%
3217566 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 46.0 3.50e-01 100.0% 55.8%
5049518 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 2.95e-01 84.6% 79.8%
5039154 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 3.45e-01 98.1% 50.0%
5059975 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.27e-01 100.0% 45.7%
3915206 10.32.1.203 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 41.0 3.00e-01 100.0% 64.0%
4057352 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.50 40.0 2.69e-01 100.0% 20.0%
4971848 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.50 41.0 2.67e-01 98.1% 47.2%