←Back to structures
MW316731.1__QVG63907.1__Mithridates_00020__00020
Bact-VirMW316731.1__QVG63907.1__Mithridates_00020__00020
Identity
- Accession:
- MW316731 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 2801403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 61.0 | 6.74e-01 | 81.9% | 100.0% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 56.0 | 6.27e-01 | 75.0% | 98.2% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 59.0 | 4.37e-01 | 93.1% | 70.3% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 51.0 | 4.84e-01 | 76.4% | 75.6% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 50.0 | 4.87e-01 | 83.3% | 70.4% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 48.0 | 4.50e-01 | 73.6% | 69.0% |
| 3iwgA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.67 | 45.0 | 3.64e-01 | 70.8% | 50.0% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.66 | 48.0 | 4.64e-01 | 76.4% | 75.0% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 57.0 | 4.21e-01 | 98.6% | 90.7% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.65 | 55.0 | 3.65e-01 | 95.8% | 31.4% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.65 | 46.0 | 4.15e-01 | 75.0% | 66.0% |
| 6h7bA01 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.65 | 44.0 | 4.38e-01 | 88.9% | 68.9% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.65 | 45.0 | 4.37e-01 | 77.8% | 65.4% |
| 6a7hA01 | 1.20.140.180 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.64 | 48.0 | 3.93e-01 | 100.0% | 43.9% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.64 | 52.0 | 5.20e-01 | 100.0% | 88.3% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 46.0 | 3.08e-01 | 83.3% | 47.4% |
| 1uxtA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 46.0 | 3.09e-01 | 83.3% | 43.2% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.59 | 42.0 | 3.91e-01 | 75.0% | 59.3% |
| 3i44A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.59 | 45.0 | 3.06e-01 | 83.3% | 38.9% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.59 | 49.0 | 3.88e-01 | 100.0% | 80.3% |
| 5cbgA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 51.0 | 4.47e-01 | 93.1% | 72.5% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.58 | 44.0 | 2.90e-01 | 80.6% | 45.4% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 45.0 | 3.09e-01 | 83.3% | 43.7% |
| 2hg2A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 44.0 | 2.98e-01 | 83.3% | 38.5% |
| 3rh9A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 44.0 | 2.94e-01 | 83.3% | 38.1% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.57 | 51.0 | 4.33e-01 | 95.8% | 69.6% |
| 3pqaB01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 45.0 | 3.02e-01 | 83.3% | 41.2% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.56 | 47.0 | 4.27e-01 | 100.0% | 77.9% |
| 5ekcF01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 49.0 | 3.26e-01 | 98.6% | 66.2% |
| 3rf7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.55 | 47.0 | 3.63e-01 | 97.2% | 93.0% |
| 3r31A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.55 | 42.0 | 2.92e-01 | 83.3% | 43.9% |
| 4fm3A00 | 1.20.1270.390 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 40.0 | 3.75e-01 | 83.3% | 72.6% |
| 5j6bD01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 47.0 | 3.17e-01 | 98.6% | 67.6% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 47.0 | 3.19e-01 | 98.6% | 72.0% |
| 3vz3A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 46.0 | 3.16e-01 | 98.6% | 74.5% |
| 4i3vA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 46.0 | 3.15e-01 | 98.6% | 68.4% |
| 1o9jC01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.52 | 46.0 | 3.04e-01 | 98.6% | 64.1% |
| 4qreA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 43.0 | 3.22e-01 | 88.9% | 84.4% |
| 7pjdC01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 45.0 | 3.41e-01 | 95.8% | 79.2% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.50 | 40.0 | 3.76e-01 | 88.9% | 76.7% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3951854 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.80 | 61.0 | 6.62e-01 | 80.6% | 96.7% |
| 4298559 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.79 | 62.0 | 3.99e-01 | 83.3% | 25.2% |
| 4150602 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.79 | 62.0 | 3.97e-01 | 83.3% | 26.8% |
| 4596871 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.79 | 61.0 | 3.93e-01 | 81.9% | 24.6% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.75 | 52.0 | 5.42e-01 | 81.9% | 80.0% |
| 4976283 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.74 | 54.0 | 4.49e-01 | 75.0% | 53.0% |
| 4003083 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.72 | 52.0 | 4.13e-01 | 75.0% | 44.4% |
| 5023625 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.72 | 52.0 | 4.58e-01 | 75.0% | 61.0% |
| 3959245 | 103.12.1.1 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR | 0.71 | 54.0 | 5.12e-01 | 80.6% | 70.6% |
| 4985449 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.71 | 51.0 | 4.83e-01 | 75.0% | 71.8% |
| 2979134 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.71 | 55.0 | 4.73e-01 | 83.3% | 73.2% |
| 3056876 | 167.1.1.0 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 | 0.71 | 55.0 | 4.73e-01 | 83.3% | 73.2% |
| 4975860 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.69 | 52.0 | 4.92e-01 | 79.2% | 92.9% |
| 3441066 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.69 | 60.0 | 4.71e-01 | 94.4% | 79.0% |
| 3233327 | 103.1.1.143 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N | 0.68 | 42.0 | 4.53e-01 | 77.8% | 73.3% |
| 3663214 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 58.0 | 4.84e-01 | 98.6% | 68.1% |
| 3236512 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.68 | 49.0 | 3.07e-01 | 76.4% | 16.3% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.68 | 48.0 | 4.56e-01 | 73.6% | 69.4% |
| 3840045 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.68 | 48.0 | 4.70e-01 | 75.0% | 78.8% |
| 5044880 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.67 | 53.0 | 3.66e-01 | 83.3% | 27.9% |
| 5013300 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.67 | 53.0 | 4.27e-01 | 87.5% | 80.7% |
| 3598426 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.66 | 49.0 | 4.20e-01 | 80.6% | 49.6% |
| 5023063 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.65 | 49.0 | 4.11e-01 | 79.2% | 55.0% |
| 4969962 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.65 | 49.0 | 4.14e-01 | 80.6% | 48.3% |
| 5024114 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.65 | 51.0 | 4.20e-01 | 88.9% | 83.6% |
| 3603679 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.65 | 53.0 | 4.50e-01 | 90.3% | 95.8% |
| 5005057 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.64 | 57.0 | 4.87e-01 | 98.6% | 93.9% |
| 5050879 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.63 | 54.0 | 4.36e-01 | 93.1% | 80.7% |
| 4949024 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.63 | 47.0 | 3.25e-01 | 81.9% | 32.6% |
| 3406651 | 592.7.1.1 ↗ | alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 | 0.63 | 45.0 | 4.51e-01 | 76.4% | 92.0% |
| 4115682 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.63 | 49.0 | 4.23e-01 | 86.1% | 54.5% |
| 3627402 | 633.15.1.0 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N | 0.62 | 46.0 | 3.00e-01 | 79.2% | 17.9% |
| 4931685 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.62 | 49.0 | 4.02e-01 | 87.5% | 84.3% |
| 5023341 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.62 | 47.0 | 4.75e-01 | 83.3% | 82.9% |
| 3229885 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.60 | 45.0 | 4.14e-01 | 81.9% | 80.6% |
| 3972364 | 7558.1.1.0 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase | 0.60 | 51.0 | 3.25e-01 | 90.3% | 46.0% |
| 1889963 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.59 | 46.0 | 3.11e-01 | 83.3% | 44.9% |
| 3334453 | 308.1.1.1 ↗ | a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 | 0.57 | 41.0 | 3.79e-01 | 76.4% | 69.5% |
| 4956837 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.56 | 50.0 | 4.18e-01 | 95.8% | 86.4% |
| 5012790 | 7076.1.1.0 ↗ | 0.55 | 41.0 | 4.10e-01 | 79.2% | 86.7% | |
| 3243786 | 6155.1.1.2 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop | 0.54 | 40.0 | 3.34e-01 | 79.2% | 76.8% |
| 3888928 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.53 | 40.0 | 3.90e-01 | 81.9% | 75.0% |
| 1556809 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.53 | 36.0 | 3.65e-01 | 70.8% | 84.1% |
| 3243399 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.52 | 39.0 | 4.01e-01 | 81.9% | 95.7% |