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MW316731.1__QVG63976.1__Mithridates_00089__00089

Bact-Vir

MW316731.1__QVG63976.1__Mithridates_00089__00089

Identity

Accession:
MW316731 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_Mithridates

TaxID: 2801403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 137-191
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.70 51.0 4.38e-01 76.4% 65.9%
2ciqA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 52.0 3.34e-01 96.4% 90.6%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 42.0 3.69e-01 72.7% 53.5%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.61 54.0 4.41e-01 100.0% 55.8%
4gnrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 41.0 3.05e-01 72.7% 74.8%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 40.0 3.04e-01 72.7% 74.1%
3dlaB01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 46.0 2.97e-01 96.4% 88.2%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.57 39.0 3.39e-01 72.7% 52.2%
7ccbA01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 46.0 3.42e-01 94.5% 55.9%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 2.89e-01 100.0% 79.2%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.14e-01 100.0% 58.5%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 40.0 2.82e-01 92.7% 87.6%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.05e-01 100.0% 64.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4552798 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.63 42.0 4.71e-01 83.6% 92.5%
3876094 10.1.1.77 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1, Laminin_G_2 0.62 52.0 3.12e-01 94.5% 28.1%
3472304 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.62 44.0 3.03e-01 76.4% 52.2%
3601202 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.61 42.0 2.65e-01 72.7% 89.1%
3963365 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 47.0 3.05e-01 89.1% 27.5%
5056067 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.59 49.0 3.11e-01 92.7% 25.2%
5053366 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 46.0 2.89e-01 90.9% 22.2%
3252010 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.57 40.0 2.73e-01 78.2% 45.2%
3491951 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.56 43.0 2.75e-01 92.7% 29.4%
4176398 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 44.0 2.84e-01 89.1% 83.6%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 44.0 2.82e-01 89.1% 80.0%
3586536 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 45.0 3.12e-01 94.5% 45.0%
3620195 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.54 43.0 2.85e-01 100.0% 56.7%
3961571 3699.1.1.3 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synth 0.53 43.0 3.42e-01 90.9% 57.5%
3682049 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.83e-01 100.0% 49.5%
3932270 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.53 45.0 2.51e-01 98.2% 22.8%
3580666 5.1.4.442 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, KNTC1_N 0.52 41.0 2.80e-01 100.0% 86.7%
None — 0.51 42.0 3.48e-01 90.9% 61.9%
3909375 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.51 40.0 3.14e-01 90.9% 48.9%
4027516 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.64e-01 94.5% 23.9%
4035765 6043.2.1.0 ↗ a+b two layers › yfeY-like › Teichoic acid transporter subunit TagH C-terminal domain › Teichoic acid transporter subunit TagH C-terminal domain 0.51 39.0 3.17e-01 92.7% 58.9%
3940283 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.67e-01 100.0% 57.5%
D2 medium residues 192-278_334-362
PDB
Domain cluster: rep: pre4_saliva_scaffold_3_prodigal-single.1__X__X__00205__D190-256_335-349
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21939.2 best Gp10_C 43.4 9.20e-11 64.7% 46.4%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ro5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 26.0 2.25e-01 90.5% 29.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1839973 877.1.1.5 ↗ a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Gp10_C 0.74 66.0 5.32e-01 94.8% 92.8%
1839976 877.1.1.3 ↗ a+b duplicates or obligate multimers › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › gp11/gp12 receptor-binding domain › Collar,S_tail_recep_bd 0.61 53.0 4.43e-01 94.8% 99.0%