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MW316732.1__QVG64122.1__Herod_00058__00057

Bact-Vir

MW316732.1__QVG64122.1__Herod_00058__00057

Identity

Accession:
MW316732 ↗
Kingdom:
phage

Quality

61.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acinetobacter_phage_Herod

TaxID: 2801402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 252-306
PDB
D2 medium residues 307-555
PDB
D3 medium residues 556-630
PDB
D4 medium residues 631-699
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.72 46.0 5.09e-01 73.9% 81.8%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.67 41.0 4.64e-01 84.1% 84.3%
2cuaB00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.60 48.0 3.96e-01 89.9% 82.6%
1oi0A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 46.0 4.02e-01 85.5% 82.4%
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.77e-01 79.7% 98.9%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 37.0 3.42e-01 76.8% 53.7%
1iq8A04 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.53 39.0 3.78e-01 79.7% 94.9%
1q7hA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.53 39.0 3.68e-01 81.2% 86.0%
2odhA01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.51 44.0 3.70e-01 100.0% 79.7%
1sgvA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 36.0 3.74e-01 76.8% 90.5%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.51 36.0 3.67e-01 76.8% 95.5%
2cx0A02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 36.0 3.49e-01 79.7% 95.2%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4966390 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.61 48.0 3.97e-01 85.5% 82.4%
4994734 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.61 48.0 4.01e-01 85.5% 86.7%
5063510 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.61 47.0 3.99e-01 85.5% 85.0%
5024075 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.60 47.0 3.77e-01 85.5% 75.5%
4961975 2492.1.1.62 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26422 0.60 46.0 3.72e-01 85.5% 75.9%
5029699 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.60 47.0 3.92e-01 85.5% 84.7%
3241120 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.60 36.0 3.78e-01 71.0% 64.6%
5038145 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.60 47.0 3.91e-01 85.5% 83.1%
4952815 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.60 46.0 3.78e-01 85.5% 79.3%
4970360 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 46.0 3.80e-01 85.5% 80.0%
4927323 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 46.0 3.83e-01 85.5% 84.8%
5069289 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.59 45.0 3.89e-01 85.5% 86.1%
4177188 3312.1.1.0 ↗ a+b two layers › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease › Domain 2 in immunoglobulin A protease 0.58 41.0 3.99e-01 73.9% 69.3%
5016524 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 41.0 3.28e-01 76.8% 68.3%
4484541 1.1.9.10 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB_C 0.55 39.0 3.95e-01 76.8% 95.7%
4946649 4052.1.1.4 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_1 0.55 37.0 3.16e-01 72.5% 84.0%
4103393 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.52 37.0 3.91e-01 76.8% 93.3%
3886687 1.1.9.6 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0113 0.52 39.0 3.65e-01 82.6% 84.4%
4943587 1.1.9.54 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.52 39.0 3.66e-01 81.2% 87.1%
186 1.1.9.17 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.52 36.0 3.63e-01 73.9% 92.6%
4975602 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 39.0 3.74e-01 84.1% 96.2%
4949393 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.51 36.0 3.33e-01 73.9% 84.4%
5054829 1.1.9.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.50 35.0 3.51e-01 76.8% 96.0%