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MW316733.1__QVG64384.1__Bestia_00151__00151
Bact-VirMW316733.1__QVG64384.1__Bestia_00151__00151
Identity
- Accession:
- MW316733 ↗
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-37
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gf8A02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 56.0 | 3.94e-01 | 97.3% | 59.5% |
| 2x5jQ01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 55.0 | 3.55e-01 | 94.6% | 39.0% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 54.0 | 3.36e-01 | 100.0% | 52.7% |
| 1mo9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 53.0 | 3.36e-01 | 97.3% | 17.6% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 50.0 | 3.36e-01 | 97.3% | 41.1% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.62 | 50.0 | 3.48e-01 | 100.0% | 69.2% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.61 | 49.0 | 3.32e-01 | 100.0% | 49.4% |
| 2nxwA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.61 | 45.0 | 2.99e-01 | 81.1% | 78.9% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 41.0 | 3.33e-01 | 78.4% | 33.8% |
| 5jy6B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 47.0 | 3.18e-01 | 94.6% | 37.9% |
| 5mi7A03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.59 | 42.0 | 2.52e-01 | 75.7% | 30.7% |
| 5flxf00 | 6.20.50.150 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.58 | 40.0 | 3.44e-01 | 78.4% | 41.1% |
| 2czrA01 | 3.40.1350.70 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain | 0.58 | 41.0 | 3.04e-01 | 75.7% | 31.1% |
| 2k5iA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.58 | 44.0 | 3.67e-01 | 97.3% | 52.4% |
| 5dxfB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.58 | 47.0 | 2.93e-01 | 100.0% | 45.2% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.57 | 43.0 | 4.03e-01 | 89.2% | 78.4% |
| 2k5iA02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.57 | 44.0 | 3.70e-01 | 97.3% | 47.4% |
| 4gipD03 | 2.60.40.1690 | Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein | 0.57 | 43.0 | 3.83e-01 | 86.5% | 98.2% |
| 6lcuA01 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.57 | 41.0 | 3.11e-01 | 81.1% | 29.6% |
| 1zpdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.56 | 41.0 | 2.80e-01 | 81.1% | 77.9% |
| 1sy7A03 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 42.0 | 2.83e-01 | 94.6% | 28.7% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.55 | 42.0 | 3.08e-01 | 86.5% | 52.4% |
| 2qikA02 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.55 | 43.0 | 2.98e-01 | 100.0% | 54.1% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.55 | 40.0 | 2.98e-01 | 100.0% | 46.6% |
| 1pvdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.55 | 40.0 | 2.78e-01 | 86.5% | 76.0% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 41.0 | 3.09e-01 | 89.2% | 49.0% |
| 2c1iA02 | 3.90.640.30 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.54 | 43.0 | 3.54e-01 | 97.3% | 74.0% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 42.0 | 3.29e-01 | 94.6% | 50.5% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.53 | 38.0 | 3.26e-01 | 81.1% | 94.2% |
| 1orrC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 40.0 | 2.45e-01 | 100.0% | 57.6% |
| 3fvqA02 | 2.40.50.450 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 35.0 | 3.43e-01 | 78.4% | 54.5% |
| 3v8uA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 37.0 | 2.84e-01 | 75.7% | 55.6% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 36.0 | 2.86e-01 | 97.3% | 71.4% |
| 3gb0A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.51 | 36.0 | 2.38e-01 | 100.0% | 71.3% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.51 | 40.0 | 2.87e-01 | 100.0% | 66.4% |
| 1pjzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 36.0 | 2.36e-01 | 81.1% | 15.9% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.51 | 39.0 | 2.51e-01 | 94.6% | 17.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013921 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.70 | 46.0 | 3.81e-01 | 75.7% | 38.5% |
| 3594835 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.66 | 52.0 | 4.17e-01 | 89.2% | 61.3% |
| 3939941 | 4.1.1.235 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 | 0.65 | 47.0 | 3.24e-01 | 78.4% | 48.5% |
| 2387818 | 101.46.1.1 ↗ | alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N | 0.65 | 47.0 | 3.43e-01 | 81.1% | 71.2% |
| 4153457 | 4.1.1.299 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 | 0.64 | 45.0 | 3.18e-01 | 78.4% | 51.1% |
| 3480666 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 53.0 | 3.63e-01 | 100.0% | 58.8% |
| 4500040 | 833.1.1.1 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin-I3 | 0.63 | 47.0 | 3.14e-01 | 83.8% | 65.6% |
| 3699601 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 48.0 | 3.97e-01 | 89.2% | 61.3% |
| 4094504 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.63 | 48.0 | 3.37e-01 | 91.9% | 24.4% |
| 5014907 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.62 | 49.0 | 3.16e-01 | 86.5% | 68.5% |
| 3992986 | 220.4.1.0 ↗ | beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins | 0.62 | 45.0 | 3.78e-01 | 100.0% | 41.3% |
| 3706175 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 44.0 | 3.25e-01 | 86.5% | 38.3% |
| 3824255 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.60 | 42.0 | 3.21e-01 | 75.7% | 43.2% |
| 5046684 | 330.7.1.0 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain | 0.60 | 43.0 | 4.08e-01 | 78.4% | 62.5% |
| 5011134 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 45.0 | 3.09e-01 | 94.6% | 33.1% |
| 4928764 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.59 | 45.0 | 3.05e-01 | 89.2% | 30.6% |
| 3958320 | 304.148.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 | 0.59 | 46.0 | 3.39e-01 | 94.6% | 59.1% |
| 3874350 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.58 | 46.0 | 3.36e-01 | 94.6% | 54.8% |
| None | — | 0.58 | 45.0 | 2.69e-01 | 94.6% | 11.0% | |
| 5021156 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 44.0 | 2.84e-01 | 89.2% | 35.0% |
| None | — | 0.58 | 47.0 | 2.60e-01 | 100.0% | 12.4% | |
| 5007152 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.57 | 47.0 | 2.74e-01 | 100.0% | 21.2% |
| 3220929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 40.0 | 3.33e-01 | 78.4% | 54.7% |
| 3783996 | 109.4.1.1379 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 | 0.56 | 45.0 | 2.59e-01 | 100.0% | 18.2% |
| 5012811 | 2006.1.3.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 | 0.55 | 41.0 | 2.98e-01 | 97.3% | 61.4% |
| 1176522 | 810.1.1.3 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › AIG2_2 | 0.55 | 43.0 | 2.98e-01 | 100.0% | 53.8% |
| 3390093 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.55 | 46.0 | 3.57e-01 | 97.3% | 50.6% |
| 4952668 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.55 | 40.0 | 3.21e-01 | 94.6% | 67.4% |
| 5013297 | 2006.1.3.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF3226 | 0.55 | 41.0 | 2.96e-01 | 100.0% | 50.3% |
| 3903050 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.54 | 44.0 | 3.29e-01 | 97.3% | 57.0% |
| 5022413 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 43.0 | 2.84e-01 | 100.0% | 94.9% |
| 4519236 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.54 | 40.0 | 2.54e-01 | 86.5% | 18.1% |
| 4164881 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.54 | 47.0 | 2.68e-01 | 100.0% | 92.6% |
| 4310836 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.53 | 39.0 | 2.52e-01 | 86.5% | 20.5% |
| 3478882 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.53 | 41.0 | 2.52e-01 | 100.0% | 13.6% |
| 4549996 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.53 | 39.0 | 2.75e-01 | 86.5% | 64.4% |
| 3421663 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.53 | 42.0 | 3.44e-01 | 94.6% | 47.1% |
| 1447973 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.53 | 43.0 | 2.69e-01 | 100.0% | 29.1% |
| 3350669 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.53 | 41.0 | 3.35e-01 | 86.5% | 45.7% |
| 3494465 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.52 | 36.0 | 2.15e-01 | 75.7% | 7.4% |
| 3932482 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 42.0 | 2.66e-01 | 100.0% | 25.3% |
| 5010477 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.52 | 43.0 | 3.28e-01 | 100.0% | 84.0% |
| 4000532 | 2.1.1.81 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 | 0.52 | 43.0 | 3.36e-01 | 97.3% | 65.9% |
| 5041616 | 213.1.1.120 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › NAT10_TcmA_helicase | 0.52 | 41.0 | 2.30e-01 | 100.0% | 18.5% |
| 3934891 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 41.0 | 2.59e-01 | 97.3% | 25.4% |
| 3088563 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 40.0 | 2.48e-01 | 100.0% | 16.0% |
| 3354127 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.51 | 43.0 | 3.61e-01 | 94.6% | 56.7% |
| 5052714 | 2003.1.7.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like | 0.51 | 36.0 | 2.23e-01 | 89.2% | 28.9% |