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QRG24193.1

Arc-Vir

MW344766__QRG24193.1__HfxHg1-080__00016

Identity

Accession:
MW344766 ↗
Protein ID:
QRG24193.1 ↗
Kingdom:
archaea

Quality

82.2 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Haloferax_virus_Halfgib1

TaxID: 2809245

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-161
PDB
Domain cluster: rep: MK892597__QDP52176.1__Unbinned2902contig1001-18__00019__D9-169
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25902.2 best DUF7961_N 294.0 3.90e-88 99.4% 99.4%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.63 51.0 5.16e-01 96.9% 85.2%
3hw5B00 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.62 52.0 5.00e-01 96.9% 77.8%
3ndhA00 3.40.600.30 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › 0.60 54.0 4.90e-01 96.2% 79.0%
4g6vA00 3.40.1350.120 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 46.0 5.00e-01 92.5% 94.7%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.60 44.0 4.06e-01 75.6% 78.6%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 36.0 3.91e-01 71.9% 71.3%
1ev7A01 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.58 47.0 4.67e-01 96.9% 80.8%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 40.0 3.39e-01 70.6% 63.5%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 51.0 4.81e-01 96.9% 83.8%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.56 23.0 3.04e-01 83.1% 68.8%
7xnzA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 36.0 3.96e-01 70.6% 81.4%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.80e-01 88.7% 98.3%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.51 38.0 4.03e-01 80.6% 86.5%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 39.0 3.41e-01 81.9% 74.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965173 2008.1.1.231 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25902 0.97 94.0 9.49e-01 99.4% 99.4%
4284098 2008.1.1.198 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 0.66 51.0 5.60e-01 91.9% 96.9%
3939159 2008.1.1.91 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.64 52.0 4.07e-01 85.6% 69.9%
3393164 2008.1.1.91 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.59 48.0 3.62e-01 85.6% 65.5%
3628154 2008.1.1.91 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C 0.57 47.0 3.69e-01 86.3% 70.2%
3614069 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.57 45.0 3.66e-01 81.9% 78.3%
5068401 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 37.0 4.07e-01 71.9% 80.0%
4951214 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 35.0 3.85e-01 71.9% 77.7%
5026996 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.54 47.0 4.27e-01 93.1% 93.5%
4928288 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 31.0 3.89e-01 71.9% 92.0%
4988165 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 42.0 4.08e-01 82.5% 98.9%
3321946 2004.1.1.140 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zeta_toxin 0.53 40.0 3.16e-01 77.5% 62.8%
3723582 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.53 37.0 3.64e-01 71.9% 66.9%
4990485 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 3.87e-01 81.2% 83.4%
4081190 148.1.3.8 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small 0.51 24.0 2.67e-01 86.9% 53.8%
3604467 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 46.0 4.24e-01 100.0% 90.0%
D2 high residues 180-261
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25903.1 best DUF7961_C 140.6 2.30e-41 98.8% 98.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 45.0 5.51e-01 100.0% 100.0%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.73e-01 100.0% 79.2%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 3.99e-01 100.0% 52.8%
3b82B00 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.59 50.0 3.75e-01 95.1% 83.6%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 47.0 4.98e-01 100.0% 98.6%
3q9oA03 3.90.175.10 Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 0.58 48.0 3.66e-01 95.1% 85.7%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.50 32.0 3.82e-01 87.8% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965174 4.1.1.489 ↗ beta barrels › SH3 › SH3 › SH3 › PF25903 0.96 93.0 8.71e-01 100.0% 86.3%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 50.0 4.74e-01 100.0% 61.1%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.72 46.0 4.23e-01 100.0% 51.4%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.58e-01 100.0% 70.6%
4018213 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 47.0 3.79e-01 100.0% 42.1%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 44.0 3.99e-01 100.0% 52.8%
3253266 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.20e-01 100.0% 61.0%
3723834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.69e-01 100.0% 88.6%
3691144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 43.0 4.69e-01 100.0% 88.6%
1144815 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.59 44.0 4.53e-01 100.0% 80.0%
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.41e-01 100.0% 74.4%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 51.0 4.51e-01 100.0% 67.8%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.56 43.0 4.28e-01 100.0% 77.6%
4948484 102.1.1.13 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF655 0.55 44.0 3.56e-01 100.0% 43.9%
3577526 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 31.0 3.33e-01 86.6% 64.3%
3856816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.36e-01 87.8% 94.1%
3997130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 48.0 4.50e-01 100.0% 80.0%
3648228 813.1.1.2 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.54 46.0 3.43e-01 96.3% 69.3%
3657300 4.1.1.190 ↗ beta barrels › SH3 › SH3 › SH3 › Transposase_23 0.52 43.0 4.41e-01 100.0% 95.0%
3216974 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 44.0 4.45e-01 100.0% 92.5%
3700460 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 3.40e-01 97.6% 52.8%
3240167 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 43.0 3.00e-01 96.3% 96.0%
3933103 385.1.1.0 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.51 31.0 2.67e-01 82.9% 38.8%
3697318 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.10e-01 100.0% 81.1%
149888 813.1.1.2 ↗ a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.50 43.0 3.26e-01 96.3% 69.5%
3290574 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.50 38.0 2.90e-01 100.0% 33.5%