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QRG24208.1

Arc-Vir

MW344767__QRG24208.1__HarHp1-055__00011

Identity

Accession:
MW344767 ↗
Protein ID:
QRG24208.1 ↗
Kingdom:
archaea

Quality

86.6 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Haloarcula_virus_Harhisp1

TaxID: 2809246

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-165
PDB
Domain cluster: rep: IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026811__D11-156
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25227.2 best DUF7845 169.2 2.20e-49 100.0% 47.9%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.67 38.0 4.95e-01 98.8% 100.0%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.61 41.0 3.52e-01 99.4% 43.5%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 31.0 3.93e-01 96.3% 84.0%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.59 30.0 4.15e-01 81.6% 100.0%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.55 37.0 4.10e-01 83.4% 82.4%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.54 38.0 4.08e-01 98.8% 83.6%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 26.0 3.42e-01 97.5% 81.1%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 26.0 3.40e-01 96.9% 88.9%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 4.01e-01 95.1% 94.7%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 40.0 3.78e-01 81.0% 75.6%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.52 40.0 3.84e-01 81.6% 80.4%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 39.0 4.06e-01 88.3% 84.3%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.46e-01 96.9% 83.7%
6a2bA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 3.33e-01 98.2% 86.5%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 41.0 2.75e-01 84.7% 89.3%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.50 31.0 3.06e-01 96.9% 53.5%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.50 39.0 2.68e-01 82.8% 78.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965901 331.2.1.15 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.87 81.0 7.92e-01 96.9% 92.0%
3175072 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.56 43.0 3.50e-01 80.4% 87.6%
3630159 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.55 43.0 3.49e-01 81.0% 91.0%
3548484 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.55 43.0 3.36e-01 81.6% 88.0%
3227579 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.55 48.0 4.71e-01 95.7% 94.4%
4021774 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.54 42.0 3.43e-01 81.6% 92.5%
4024928 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.54 41.0 3.37e-01 80.4% 88.9%
3798058 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.53 37.0 3.34e-01 71.8% 60.0%
3789044 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.53 42.0 3.29e-01 81.6% 85.7%
3782640 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.53 40.0 3.40e-01 79.1% 98.9%
2392665 5084.1.1.12 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Porin_7 0.52 31.0 3.61e-01 73.0% 81.0%
1102013 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 40.0 3.75e-01 81.6% 73.9%
3174497 2007.2.3.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.51 39.0 3.37e-01 79.1% 95.5%
3983708 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.51 35.0 3.34e-01 92.6% 58.5%
D2 high residues 175-337
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25227.2 best DUF7845 212.1 1.90e-62 98.8% 48.6%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qj4A02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.65 37.0 3.65e-01 97.5% 50.6%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.65 48.0 5.32e-01 96.3% 99.2%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.64 34.0 4.49e-01 93.3% 100.0%
2qrdA00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 41.0 4.81e-01 84.0% 96.5%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.40e-01 92.0% 75.7%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 46.0 4.87e-01 87.7% 98.6%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.95e-01 92.6% 98.0%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 4.27e-01 86.5% 78.4%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 4.58e-01 87.7% 86.8%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 4.74e-01 89.6% 94.3%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 4.54e-01 87.7% 92.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 4.65e-01 98.2% 99.3%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 45.0 4.57e-01 87.7% 93.2%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 46.0 4.80e-01 92.6% 99.3%
8p5sA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 44.0 3.92e-01 87.1% 90.3%
1j3mA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.54 40.0 4.43e-01 89.6% 100.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 4.66e-01 96.9% 98.0%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 4.71e-01 92.6% 98.0%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 4.04e-01 87.1% 77.8%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 42.0 4.13e-01 82.8% 99.4%
2ddzE00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 37.0 3.52e-01 87.7% 61.1%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 4.58e-01 92.0% 99.3%
2jbvA04 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.51 44.0 4.31e-01 92.0% 87.9%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 4.27e-01 89.6% 92.7%
3n0qA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.51 44.0 3.66e-01 92.6% 67.7%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 43.0 3.98e-01 92.6% 78.8%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 37.0 3.56e-01 76.7% 86.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962935 331.2.1.15 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF7845 0.92 87.0 8.25e-01 100.0% 85.4%
3725269 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.68 41.0 4.73e-01 94.5% 80.8%
3611952 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 51.0 5.26e-01 92.6% 84.4%
5034371 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 39.0 2.92e-01 96.9% 23.3%
3367405 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.63 35.0 4.10e-01 87.7% 78.2%
3261437 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 42.0 4.44e-01 87.7% 74.7%
4015323 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.62 42.0 3.67e-01 99.4% 45.2%
3687869 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 41.0 4.28e-01 92.6% 74.0%
3284653 2003.1.2.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase 0.61 39.0 2.72e-01 97.5% 19.2%
3839195 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.60 38.0 3.83e-01 100.0% 60.6%
3706456 304.55.2.8 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.60 34.0 4.26e-01 87.1% 96.7%
3838191 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.60 38.0 3.98e-01 100.0% 69.7%
4010883 331.3.1.10 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.60 50.0 4.96e-01 87.7% 95.3%
3817434 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.59 49.0 4.14e-01 87.7% 75.4%
5010025 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 42.0 4.87e-01 82.2% 100.0%
3594509 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 47.0 5.03e-01 96.3% 99.3%
3920188 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.59 49.0 4.29e-01 87.7% 74.5%
3812918 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.59 48.0 4.35e-01 86.5% 74.5%
4417254 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 41.0 4.39e-01 96.3% 83.6%
3808409 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.58 48.0 4.21e-01 87.7% 76.3%
3669098 331.3.1.43 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.58 49.0 4.14e-01 88.3% 77.7%
3836814 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.58 45.0 4.84e-01 92.6% 95.7%
3784499 331.3.1.6 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.58 48.0 4.62e-01 87.7% 91.9%
3628385 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.58 48.0 4.10e-01 87.7% 70.2%
3289546 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.57 44.0 4.29e-01 81.6% 100.0%
3681942 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.56 49.0 4.42e-01 93.9% 76.4%
3499475 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 46.0 3.96e-01 87.7% 70.5%
3190565 331.3.1.10 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.56 46.0 4.63e-01 87.7% 93.3%
5045400 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 31.0 2.35e-01 83.4% 22.3%
4051950 331.3.1.1 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.56 48.0 4.93e-01 92.6% 96.8%
3740851 331.3.1.30 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.56 48.0 4.26e-01 92.0% 73.4%
3290125 2003.1.2.228 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase, Lycopene_cycl 0.55 38.0 2.74e-01 97.5% 24.6%
4169936 304.55.1.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains 0.55 33.0 3.49e-01 87.7% 64.8%
3961324 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.55 48.0 4.38e-01 92.6% 71.9%
3961758 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.55 45.0 4.68e-01 87.7% 98.7%
4984404 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 45.0 4.73e-01 92.6% 98.6%
5040016 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 47.0 4.81e-01 92.6% 96.8%
5009761 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.54 44.0 4.67e-01 86.5% 100.0%
3928583 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.54 40.0 4.34e-01 99.4% 94.7%
3628966 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 46.0 4.11e-01 92.6% 71.6%
3807410 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.53 43.0 3.82e-01 87.1% 65.0%
7034 314.1.1.8 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › DUF366 0.53 37.0 3.54e-01 87.7% 61.2%
3958686 331.3.1.20 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.52 45.0 4.04e-01 92.6% 70.9%
3951932 7579.1.1.8 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 41.0 2.98e-01 87.1% 89.8%
D3 high residues 348-444
PDB
Domain cluster: rep: IMGVR_UViG_3300000915_000010-3300000915-JGI12329J12844_10011141__D76-115_119-168
D4 high residues 451-536
PDB
Domain cluster: rep: IMGVR_UViG_3300000915_000010-3300000915-JGI12329J12844_10011141__D183-205_207-208_210-264