←Back to structures

MW353169.1__QRI43993.1__X__00001

Bact-Vir

MW353169.1__QRI43993.1__X__00001

Identity

Accession:
MW353169 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Mycoplasma_phage_sp.

TaxID: 2806022

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-160
PDB
Domain cluster: representative
D2 medium residues 172-229
PDB
Domain cluster: representative
D3 medium residues 230-283
PDB
Domain cluster: representative
D4 medium residues 284-458
PDB
Domain cluster: representative
D5 medium residues 485-601_650-682_748-770
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 4.10e-01 72.3% 98.8%
2wraA00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.55 28.0 3.27e-01 78.6% 68.0%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.53 27.0 3.12e-01 76.3% 64.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 29.0 3.30e-01 85.5% 70.0%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 33.0 3.61e-01 72.8% 74.3%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.51 40.0 4.01e-01 95.4% 80.1%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.50 29.0 3.25e-01 77.5% 71.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3172864 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.67 48.0 4.36e-01 72.3% 99.6%
5054725 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.66 29.0 3.51e-01 71.7% 60.8%
4932446 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.66 28.0 3.35e-01 71.1% 58.3%
4940126 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.64 26.0 3.17e-01 71.1% 55.0%
4318546 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.64 29.0 3.30e-01 72.3% 54.8%
3782223 331.3.1.17 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.64 45.0 4.10e-01 70.5% 83.1%
1308671 222.1.1.20 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MFE-2_hydrat-2_N 0.62 33.0 3.74e-01 72.3% 67.2%
4025179 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 43.0 4.10e-01 71.7% 100.0%
3217507 243.1.1.98 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382_C 0.59 28.0 3.37e-01 72.8% 66.7%
5030898 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.59 27.0 3.28e-01 71.7% 64.2%
5027896 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.59 28.0 3.21e-01 71.1% 59.2%
3599419 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.54 32.0 3.80e-01 79.8% 86.1%
3257412 331.9.1.4 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.53 31.0 3.71e-01 79.8% 85.2%
3783152 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.53 42.0 3.44e-01 83.2% 92.3%
3265608 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 28.0 3.39e-01 86.1% 76.7%
4652688 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.51 28.0 3.06e-01 72.8% 65.0%
D6 medium residues 602-649_683-712_725-747
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kvzA00 3.10.130.10 Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain 0.55 31.0 3.06e-01 77.2% 50.5%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.52 42.0 3.56e-01 89.1% 85.2%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 37.0 3.48e-01 100.0% 63.0%
2r2dA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 44.0 3.27e-01 100.0% 98.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3189800 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 32.0 2.90e-01 73.3% 37.9%
3684690 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.52 30.0 3.16e-01 98.0% 60.0%
3998929 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.44e-01 75.2% 67.7%
3967397 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.50 37.0 3.27e-01 77.2% 87.3%